The Real-time PCR Data Markup Language (RDML) is a structured and universal data standard for exchanging quantitative PCR (qPCR) data. The data standard should contain sufficient information to understand the experimental setup, re-analyse the data and interpret the results.
http://www.rdml.org/
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Home | rdml.org Reviews
https://rdml.org
The Real-time PCR Data Markup Language (RDML) is a structured and universal data standard for exchanging quantitative PCR (qPCR) data. The data standard should contain sufficient information to understand the experimental setup, re-analyse the data and interpret the results.
rdml.org
MIQE
http://www.rdml.org/guidelines.php
MIQE: Minimum Information for Publication of Quantitative Real-Time PCR Experiments. The RDML file format is a recommended element in the Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE) guidelines ( Bustin et al., Clinical Chemistry, 2009. The aim of MIQE, coordinated by a group of research-active scientists and coordinated under the umbrella of MIBBI. Download the MIQE paper. Download the MIQE checklist. Checklist for Quantitative PCR Assays. Number within each group.
RDML tools
http://www.rdml.org/tools.php
In the left column of the page the number of unique targets, samples, experimenters and thermal cycling conditions present in the annotation files is shown between brackets, preceeded by the number of unique targets, samples, experimenters and thermal cycling conditions references in the data files. If you supply an email address, the RDML file will be emailed to you. (hide info.). Therm Cyc. conditions file. Raw amplification data file. Raw melting data file. 0 (0) PCR conditions. Add a list of targets.
Join
http://www.rdml.org/support.php
If you support the need and concept of RDML. Please complete this form. While we welcome any support, please have your supervisor or director completed this form for you (if possible). Email address (will not be made public):. Job function - Position - Title:. Please select - -. British Indian Ocean Territory. Congo, Democratic Republic Of. Heard and McDonald Islands. Korea, Democratic Peoples Republic Of. Korea, Republic Of. Macedonia, Republic Of. Micronesia, Federated States Of. Saint Kitts and Nevis.
Files
http://www.rdml.org/files.php
Introduction to RDML v1.2. The RDML file format is developed by the RDML consortium ( http:/ www.rdml.org. The master elements are :. Experimenter (contact information of the experimenter). Documentation (pieces of information to be used at many places). Dye (dye type, used by targets). Sample (description of a sample). Target (description of a targets). Thermal cycling conditions (description of the cycling conditions). Experiment (a collection of several qPCR runs). The xml file containing the RDML com...
News
http://www.rdml.org/news.php
RDML-Ninja and RDMLdb for standardized exchange of qPCR data". RDML Data Format - Ready For The Next Level? By Andreas Untergasser at the 7th international qPCR and NGS Event, Freising, Germany. RDML version 1.2 is released. Find out what's new. The 2009 RDML paper (Lefever et al.) hit the 85 citation mark today according to Google Scholar. RDML package for R added to the Tools section (RDML compliant software). Four years of RDML qPCR data format - Achievements and Opportunities. Step up to the MIQE.
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REX format | OnlinePCR
http://www.onlinepcr.com/format/rex
The REX file format is developed by the QiaGen company for their RotorGene brand thermal cyclers. Format allows to store qPCR data and results of analyses. OnlinePCR supports REX format natively. OnlinePCR team puts effort into unification of whole PCR process. Thus, we are fans of RDML format and RDML consortium. Company: wolf-danniel s.r.o. 2015 Wolf-Danniel s.r.o.
Tools - RDMLdb
http://www.rdmldb.org/tools.php
Tools at www.rdml.org. Check if an RDML file is valid according to the RDML data standard. Manually create an RDML-file based on qPCR machine output. Merge two or more RDML files of the same project into one file.
Biogazelle's co-authored papers | Biogazelle
https://www.biogazelle.com/knowledge-center/publications
Skip to main content. Van den Broeck W. Van den Hoff M J.B. Van der Luijt R. Van der Meulen J. In silico assay quality control. Below is a growing list of peer-reviewed articles or book chapters co-authored by Biogazelle scientists (in bold). The most recent articles are on top. Full text PDF files can be downloaded after login. Flexible analysis of digital PCR experiments using generalized linear mixed models. Biomolecular Detection and Quantification. Vynck M, Vandesompele J. Zeka F, Mestdagh P. The un...
EDS format | OnlinePCR
http://www.onlinepcr.com/format/eds
The EDS file format is developed by the Applied Biosystems company and allows to store qPCR data as well as plate setup and other information about an experiment and thermal cycler configuration. OnlinePCR supports EDS format natively. OnlinePCR team puts effort into unification of whole PCR process. Thus, we are fans of RDML format and RDML consortium. Company: wolf-danniel s.r.o. 2015 Wolf-Danniel s.r.o.
OnlinePCR
http://www.onlinepcr.com/about
What is Online PCR. OnlinePCR is a cloud based system for analysis and management of realtime PCR data uploaded in various formats. Both qualitative or quantitative analysis can be performed at one click for all channels. Immediately a table with results for all channels is displayed. If any information is missing in measurement file, then user is asked for them through a brief wizard. The story behind OnlinePCR. Software and data analysis team was recruited from Czech Technical University In Prague.
DNA Computing @ decal's security shed
http://decal.sdf.org/biopunk.html
Computing @ decal's security shed. Voyage of the Nano-Surgeons. Vendor of an open source dual channel real-time. Open qPCR Informational Poster. MiniPCR DNA Discovery System™. Console mode oligonucleotide sequence generator I wrote. Real-time PCR Data Markup Language. Dynamic Programming, the Needleman/Wunsch DNA global sequence alignment technique. DNA Computing Lecture Notes. Web Index of my. Professor (David Harlan Wood). Molecular Bioinformatics 2001, Uppsala University -. Lecture Notes by Per Kraulis.
RDML format | OnlinePCR
http://www.onlinepcr.com/format/rdml
OnlinePCR team puts effort into unification of whole PCR process. Thus, we are fans of RDML format and RDML consortium. Company: wolf-danniel s.r.o. 2015 Wolf-Danniel s.r.o.
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RDML - consortium
RDML - consortium - The RDML-consortium was founded to develop a universal data format for real-time PCR data, named RDML (Real-time PCR Data Markup Language). The intention to design an universal data format is based on the experience that it is difficult to share qPCR data between different laboratories and users, or exchange data between different software packages or analysis tools. - gene-quantification.info.
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The Real-time PCR Data Markup Language (RDML) is a structured and universal data standard for exchanging quantitative PCR (qPCR) data. The data standard should contain sufficient information to understand the experimental setup, re-analyse the data and interpret the results.
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