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University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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UWEncode - Home | regulome.org Reviews
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University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.
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UWEncode - Home | regulome.org Reviews

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University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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UWEncode - Publications

http://www.regulome.org/publications

J Bioinform Comput Biol. Proc Natl Acad Sci USA. An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level. Developmental fate and cellular maturity encoded in human regulatory DNA landscapes. DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements. Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions. Proc Natl Acad Sci USA. Widespread plasticit...

2

UWEncode - Software: Bedops

http://www.regulome.org/software

The utilities in the BEDOPS software suite help to address common questions raised during genomics studies, mostly with regard to overlap and proximity relationships between data sets. A prominent advantage of the utilities over related software is scalability: the tools are designed to work with arbitrarily large data in a relaxed BED format. You can download code and binaries at the bedops GitHub site. You can also discuss the BEDOPS suite at our users forum. The utilities in the suite are:. The conver...

3

UWEncode - Data Quality: Quality Control Pipeline (post library sequencing)

http://www.regulome.org/data/quality

Data Quality: Quality Control Pipeline (post library sequencing).

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UWEncode - Sitemap

http://www.regulome.org/sitemap

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UWEncode - Protocols

http://www.regulome.org/protocols

TruSeq ChIP Library 2X Ampure Bead. Total RNA Extraction From Tx Samples. DNaseI treatment - cultured human cells. Human hematopoietic cells: DNaseI treatment, crosslinking, and preserving cells for RNA. Nuclei isolation from human tissue using a Dounce homogenizer and subsequent DNaseI treatment and crosslinking. Nuclei isolation from human tissue using gentleMACS Dissociator and subsequent DNaseI treatment and crosslinking. DNaseI treatment - cultured mouse cells.

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UWEncode - Home

University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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