recology.info
Fork · Recology, R/etc.
http://recology.info/fork
Tech details about the site and how to "fork" it. R code executed and compiled to Markdown and html using knitr. Styling using Twitter Bootstrap. CSS icons from FontAwesome. Static site generation with Jekyll. Source code hosting on Github. Clone the site source code from GitHub. Git clone https:/ github.com/sckott/sckott.github.com.git. Install Ruby version = 1.9. Sudo apt-get install ruby1.9.1-full. Make sure the latest version is selected. Sudo gem install jekyll.
converged.yt
Practical distance sampling in R
http://converged.yt/RDistanceBook
Distance Samping in R. Introduction to distance sampling. What else affects detectability? Improving the fit of detection functions. How certain are we in our estimates? Why build spatial models? Survey data set up. Crash course in GAMs. Estimating and mapping abundance. Obtaining, constructing and selecting covariates. Getting your data into shape. R and package versions. Practical distance sampling in R. Practical distance sampling in R. A book about distance sampling. During 2014-2017, I ( Dave Miller.
recology.info
Archives · Recology, R/etc.
http://recology.info/archives
Gbids - GenBank IDs API is back up! Nonoyes - text analysis of Reply All podcast transcripts. Marine Regions data in R. Atomize - make new packages from other packages. GenBank IDs API - get, match, swap id types. Heythere - a robot to automate GitHub issue comments. Scrubr - clean species occurrence records. Request - a high level HTTP client for R. Binomen - Tools for slicing and dicing taxonomic names. Pygbif - GBIF client for Python. Noaa - Integrated Surface Database data. Oai - an OAI-PMH client.
recology.info
rnoaa - Weather data in R · Recology, R/etc.
http://recology.info/2015/07/weather-data-with-rnoaa
Rnoaa - Weather data in R. Source: .Rmd/.md. NOAA provides a lot of weather data, across many different websites under different project names. The R package. Accesses many of these, including:. NOAA NCDC climate data, using the NCDC API version 2. Severe weather data docs are at http:/ www.ncdc.noaa.gov/swdiws/. Data from the NOAA Storm Prediction Center. HOMR - Historical Observing Metadata Repository - from NOAA NCDC. Used to provide access to ERDDAP servers. But a separate package rerddap. You probab...
recology.info
fulltext - a package to help you mine text · Recology, R/etc.
http://recology.info/2015/08/full-text
Fulltext - a package to help you mine text. Source: .Rmd/.md. Finally, we got. Up on CRAN - our first commit was May last year. The tasks facilitated by. Search - search for articles. Retrieve - get full text. Convert - convert from format X to Y. Text - if needed, get text from pdfs/etc. Extract - pull out the bits of articles that you want. We hope that this package can help bring text-mining to the masses - making it easy for anyone to do do, not just text-mining experts. Might be a good place to go.
recology.info
rerddap - General purpose R client for ERDDAP servers · Recology, R/etc.
http://recology.info/2015/06/rerddap
Rerddap - General purpose R client for ERDDAP servers. Source: .Rmd/.md. Is a data server that gives you a simple, consistent way to download subsets of gridded and tabular scientific datasets in common file formats and make graphs and maps. Besides it’s own RESTful interface. Much of which is designed based on OPeNDAP. ERDDAP can act as an OPeNDAP server and as a WMS. Server for gridded data. And is the default when using the. Function. We use. By default, but you can choose to use. Most I think serve s...
recology.info
R-esources · Recology, R/etc.
http://recology.info/rresources
IDE's (Integrated Development Environments). RStudio: http:/ www.rstudio.org/. Tinn-R: http:/ www.sciviews.org/Tinn-R/. StatET: http:/ www.walware.de/goto/statet. Eclipse: http:/ www.eclipse.org/. R Commander: http:/ socserv.mcmaster.ca/jfox/Misc/Rcmdr/. JGR: http:/ cran.r-project.org/web/packages/JGR/index.html. Deducer: http:/ www.deducer.org/pmwiki/pmwiki.php? Rattle: http:/ rattle.togaware.com/. RedR: http:/ www.red-r.org/. SublimeText2 (aka ST2) http:/ www.sublimetext.com/. Especially the R tag.
recology.info
Recology, R/etc.
http://recology.info/page2
Marine Regions data in R. UPDATE: pkg API has changed - updated the post below to work with the current CRAN version, submitted 2016-08-02. I was at a hackathon focused on Ocean Biogeographic Information System (OBIS) data back in November last year in Belgium. One project idea was to make it easier to get at data based on one or more marine regions. I was told that Marineregions.org is often used for shape files to get different regions to then do other work with. Or get the dev version. A tibble: 5 x 4...
