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Ryan G. Coleman

Ryan G. Coleman. PhD, Genomics and Computational Biology. Dept of Biochemistry and Biophysics. Marcus Fischer, Ryan G. Coleman*, James S. Fraser, Brian K. Shoichet. Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. July 2014. Volume 6, Issue 7. PubMed Central Free Full Text. Highlighted in Nature Chemistry. Xavier Barril. Ligand discovery: Docking points. Journal of Computer-Aided Molecular Design. March 1, 2014. Volume 28, Issue 3.

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Ryan G. Coleman | rgc.name Reviews
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Ryan G. Coleman. PhD, Genomics and Computational Biology. Dept of Biochemistry and Biophysics. Marcus Fischer, Ryan G. Coleman*, James S. Fraser, Brian K. Shoichet. Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. July 2014. Volume 6, Issue 7. PubMed Central Free Full Text. Highlighted in Nature Chemistry. Xavier Barril. Ligand discovery: Docking points. Journal of Computer-Aided Molecular Design. March 1, 2014. Volume 28, Issue 3.
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1 papers
2 talks
3 code
4 co authors
5 links
6 kim sharp lab
7 school of medicine
8 university of pennsylvania
9 recent papers
10 nature chemistry
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Ryan G. Coleman | rgc.name Reviews

https://rgc.name

Ryan G. Coleman. PhD, Genomics and Computational Biology. Dept of Biochemistry and Biophysics. Marcus Fischer, Ryan G. Coleman*, James S. Fraser, Brian K. Shoichet. Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. July 2014. Volume 6, Issue 7. PubMed Central Free Full Text. Highlighted in Nature Chemistry. Xavier Barril. Ligand discovery: Docking points. Journal of Computer-Aided Molecular Design. March 1, 2014. Volume 28, Issue 3.

INTERNAL PAGES

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1

Animations and Art

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SplatterProteins, my Zazzle store, support science, get some art for yourself! SplatterProteins, the etsy side of the store. Get in touch for custom work. These works by Ryan G. Coleman. Is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. The 4th Membrane Protein Technologies Meeting, Program Art. Ryan G. Coleman. S animations, for details see recent papers.

2

Ryan G. Coleman's Archived Talks and Meetings

http://rgc.name/archived_talks.html

Archived Talks and Meetings. I'll be part of the postdoc networking panel. I gave a talked on "DOCK 3.7 and SAMPL4". ACS 246th National Meeting in Indianapolis, Indiana. Poster: "Molecular recognition studied using computation and experiment" in the Academic Employment Initiative. Session. On September 09, 2013 from 8:00 pm to 10:00 pm in Indiana Convention Center, Room: Halls F&G. Ryan G. Coleman Participation to Reward Incentives in NAR Competition. NationalAssociation of Rocketry Annual Meet 55. Disse...

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Prediction verified

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In 2006, my co-authors and I predicted some druggable sites on p38alpha kinase in our paper on searching for druggable sites. In 2010, a large group at Abbott led by Philip Hadjuk reported. Identified through screening that bound in one of our predicted druggable sites, confirmed by crystallography:. If you want to look for yourself, check out pdb code 3NEW. Using the residues from the 1KV1. Back to Ryan Coleman's homepage.

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UCSF DOCK 3.7

http://dock.compbio.ucsf.edu/DOCK3.7

The Official UCSF DOCK Web-site. Older Versions of DOCK. Is written in Fortran (and some C); it is an update of DOCK 3.6. With many improved features. It uses new Flexibase/DB2 files found on ZINC. If you use DOCK3.7, please cite the following paper: Coleman, Carchia, Sterling, Irwin and Shoichet. PLOS ONE 2013. Highlights of new features:. New mol2 output with full atom typing and bond information. Improved sampling algorithm with better control of sampling. Multiple ligand pose output.

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Animations and Art

http://ryancoleman.name/animations.html

SplatterProteins, my Zazzle store, support science, get some art for yourself! SplatterProteins, the etsy side of the store. Get in touch for custom work. These works by Ryan G. Coleman. Is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. The 4th Membrane Protein Technologies Meeting, Program Art. Ryan G. Coleman. S animations, for details see recent papers.

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Ryan G. Coleman

Ryan G. Coleman. PhD, Genomics and Computational Biology. Dept of Biochemistry and Biophysics. Marcus Fischer, Ryan G. Coleman*, James S. Fraser, Brian K. Shoichet. Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. July 2014. Volume 6, Issue 7. PubMed Central Free Full Text. Highlighted in Nature Chemistry. Xavier Barril. Ligand discovery: Docking points. Journal of Computer-Aided Molecular Design. March 1, 2014. Volume 28, Issue 3.

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