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D3: Computational Biology & Applied Algorithmics: Software: RINalyzer

Join the Linkedin group. On Residue Networks in Structural Biology! A new version of RINalyzer for Cytoscape 3.x is released. RINalyzer has been greatly extended with new functionality and is now using the structureViz2 app. To interact with UCSF Chimera. For a brief introduction of the new features click here. The RINalyzer app is now available for download here. And the structureViz app here. All requirements and installation instructions are available here. A new version of RINerator is released.

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D3: Computational Biology & Applied Algorithmics: Software: RINalyzer | rinalyzer.de Reviews
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Join the Linkedin group. On Residue Networks in Structural Biology! A new version of RINalyzer for Cytoscape 3.x is released. RINalyzer has been greatly extended with new functionality and is now using the structureViz2 app. To interact with UCSF Chimera. For a brief introduction of the new features click here. The RINalyzer app is now available for download here. And the structureViz app here. All requirements and installation instructions are available here. A new version of RINerator is released.
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D3: Computational Biology & Applied Algorithmics: Software: RINalyzer | rinalyzer.de Reviews

https://rinalyzer.de

Join the Linkedin group. On Residue Networks in Structural Biology! A new version of RINalyzer for Cytoscape 3.x is released. RINalyzer has been greatly extended with new functionality and is now using the structureViz2 app. To interact with UCSF Chimera. For a brief introduction of the new features click here. The RINalyzer app is now available for download here. And the structureViz app here. All requirements and installation instructions are available here. A new version of RINerator is released.

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1

D3: Computational Biology & Applied Algorithmics: Software: RINalyzer

http://www.rinalyzer.de/rinerator.php

A new version of RINerator is released. In particular, it computes conservation scores from a user-specified multiple sequence alignment ( details. Retrieves biochemical amino acid properties from external resources ( details. And generates RINs compatible with Cytoscape 3.x and RINalyzer 2.x ( details. RINerator generates user-defined RINs from a 3D protein structure and enriches them with additional biochemical information. In contrast to previous simplistic interaction definition approaches based ...

2

D3: Computational Biology & Applied Algorithmics: Software: RINalyzer

http://www.rinalyzer.de/docu/app_features.php

New App Features and Menus. RIN Import and Generation. Interface to UCSF Chimera. Reusing and Extending RINalyzer. Interface to UCSF Chimera. Import and generation of RINs. Import RIN from Web Service. This feature allows the direct retrieval of RIN data from our web service RINdata. It automatically imports the RIN and the associated attributes as well as opens the corresponding PDB structure in UCSF Chimera. Since the protein structure cannot be saved in Cytoscape, it is saved for further use into.

3

D3: Computational Biology & Applied Algorithmics: Software: RINalyzer

http://www.rinalyzer.de/documentation.php

New App Features and Menus. RIN Import and Generation. Interface to UCSF Chimera. Document was last modified on June 28 2014 18:39:11. Computer Vision and Multimodal Computing. Computational Biology and Applied Algorithmics. Databases and Information Systems.

4

D3: Computational Biology & Applied Algorithmics: Software: RINalyzer

http://www.rinalyzer.de/tutorials.php

Tutorials for Cytoscape 3.x. Tutorial 1: Retrieve and visualize RIN data. Tutorial 2: Create a RIN from UCSF Chimera. Tutorial 3: Compute (un)weighted centralities for a RIN. Tutorial 4: Compare RINs using a pre-defined alignment file. Tutorial 5: Compare RINs using UCSF Chimera. Tutorials for Cytoscape 2.x. Tutorial 1: Prepare RIN data. Tutorial 2: Use node sets. Tutorial 3: Analyze (un)weighted networks. Tutorial 4: Compare RINs. Tutorial 5: Use ConSurf-DB data. Computer Vision and Multimodal Computing.

5

D3: Computational Biology & Applied Algorithmics: Software: RINalyzer

http://www.rinalyzer.de/docu/features.php

New App Features and Menus. RIN Import and Generation. Interface to UCSF Chimera. Reusing and Extending RINalyzer. RINalyzer provides several features that support the generation, analysis and visualization of RINs. They can be grouped in the following categories:. Import and Create RINs. This is a group of features including the automatic retrieval of RINs from the RINdata. Interface to UCSF Chimera. Since version 2.x of RINalyzer, the structureViz app. Complementary Cytoscape 3.x Apps. All Cytoscape 3&...

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D3: Computational Biology & Applied Algorithmics: Software: RINalyzer

Join the Linkedin group. On Residue Networks in Structural Biology! A new version of RINalyzer for Cytoscape 3.x is released. RINalyzer has been greatly extended with new functionality and is now using the structureViz2 app. To interact with UCSF Chimera. For a brief introduction of the new features click here. The RINalyzer app is now available for download here. And the structureViz app here. All requirements and installation instructions are available here. A new version of RINerator is released.

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