rna.usc.edu
Research: Mak Research Group, Chemistry, Univsity of Southern CaliforniaResearch Home Page of the Chi Mak (C.H. Mak) Group, Department of Chemistry, University of Southern California (USC)
http://rna.usc.edu/
Research Home Page of the Chi Mak (C.H. Mak) Group, Department of Chemistry, University of Southern California (USC)
http://rna.usc.edu/
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Research: Mak Research Group, Chemistry, Univsity of Southern California | rna.usc.edu Reviews
https://rna.usc.edu
Research Home Page of the Chi Mak (C.H. Mak) Group, Department of Chemistry, University of Southern California (USC)
rna.usc.edu
Research: Mak Research Group, Chemistry, Univsity of Southern California
http://rna.usc.edu/software.php
University of Southern California. 1 Single-Nucleotide RNA and Ribose Loop Closure Subroutines. Fortran 77 and ANSI C subroutines to reclose single-nucleotide loops and riboses in RNAs or DNAs. CH Mak, "RNA conformational sampling: I. Single-Nucleotide Loop Closure", J. Comput. Chem. Vol 29, p.926-933, 2008. 2 Multi-Nucleotide RNA Loop Closure Subroutines. Fortran 77 and ANSI C subroutines to reclose arbitrary-length multi-nucleotide loops in RNAs or DNAs. 4 Chemical Kinetics Simulation.
Research: Mak Research Group, Chemistry, Univsity of Southern California
http://rna.usc.edu/hardware.php
University of Southern California. 12 motherboards, AMD Quad core on each board, 2GB memory per node, one 1600-core ATI GPGPU per board, 4 TB storage. 48 AMD cores, 2GB memory per node, 2 TB storage. 64 AMD cores, 1.5GB memory per node, 2 TB storage. University of Southern California.
Research: Mak Research Group, Chemistry, Univsity of Southern California
http://rna.usc.edu/teaching.php
University of Southern California. This page is under development. University of Southern California.
Mak Research Group, Chemistry, Univsity of Southern California
http://rna.usc.edu/home.php
University of Southern California. Innovative Algorithms for Molecular Simulations. Chemical Theory . Statistical Mechanics . Computing and Simulations. Professor Chi H. Mak. BS (Chem Engn, Berkeley, 1984). PhD (Chemistry, Stanford, 1988). University of Southern California. Los Angeles, California 90089-0482, U.S.A. E-mail: cmak AT usc.edu. Facebook: Mak Group @USC Chemistry. RNA Modeling and Tertiary Structure Prediction. Computer Simulation/Modeling Techniques and Algorithms. Undergradaute Research Sem...
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TBI - ViennaRNA Package 2
Institute for Theoretical Chemistry. The ViennaRNA Web Services. This server provides programs, web services, and databases, related to our work on RNA secondary structures. For general information and other offerings from our group see the main TBI web server. Predicts minimum free energy structures and base pair probabilities from single RNA or DNA sequences. Secondary structures from an alignment of several related RNA or DNA sequences. You need to upload an alignment. Assists you in siRNA design.
Prof. Dr. Manja Marz
Bioinformatik für Hochdurchsatzverfahren. Friedrich Schiller Universität Jena. Bioinformatik in Jena studieren. RNA Bioinformatics and High Throughput Analysis Jena. Prof Dr. Manja Marz. Junior-Endowed Professorship of Carl-Zeiss-Stiftung. For Bioinformatics/High Throughput Analysis. Faculty of Mathematics und Computer Science. Faculty of Mathematics und Computer Science. We currently have Postdoc, PhD and SHK positions. For further information contact:.
Mathews Lab Website Home
David H. Mathews. Department of Biochemistry and Biophysics. University of Rochester Medical Center. 601 Elmwood Avenue, Box 712. Rochester, New York 14642. Email: David Mathews[at]urmc.rochester.edu. Quick Links for Software:. RNA Secondary Structure Prediction and Analysis. RNA Secondary Structure Prediction and Analysis on the web. The source code of OligoWalk program is also available for download) - Select efficient siRNA using hybridization thermodynamics -.
rna.us - This domain may be for sale!
Find the best information and most relevant links on all topics related to rna.us. This domain may be for sale!
Research: Mak Research Group, Chemistry, Univsity of Southern California
University of Southern California. 1 Mapping RNA Folding/Unfolding Pathways via Large Loop Motions. RNAs, just like proteins, have to fold into highly specific tertiary structures in order for them to carry out the proper biological functions. Some of these include protein synthesis in the ribosome, the excision of non-coding sequence in mRNAs group I and II introns, and the regulation of gene expression by riboswitches. We have pioneered the development of a new type of Monte Carlo simulations to target...
RNA tools
RNAbows, BINDIGO, and PSR. Present intuitive visualization of RNA base pairing probabilities. Is a new, faster algorithm to calculating optimal binding of oligometric RNA to an RNA target. Is an algorithm for efficiently discriminating donor splice sites from decoy sequences.
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