robertcudmore.org robertcudmore.org

robertcudmore.org

Robert Cudmore's Home Page

Robert Cudmore, Neuroscience, Bob Cudmore, Postdoctoral researcher, Johns Hopkins, Medicine, JHMI, Department of Neuroscience, David Linden, Baltimore, Maryland, Marseille, France, in vivo, two photon, neuroscience

http://www.robertcudmore.org/

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Robert Cudmore's Home Page | robertcudmore.org Reviews
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Robert Cudmore, Neuroscience, Bob Cudmore, Postdoctoral researcher, Johns Hopkins, Medicine, JHMI, Department of Neuroscience, David Linden, Baltimore, Maryland, Marseille, France, in vivo, two photon, neuroscience
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KEYWORDS
1 Robert H Cudmore
2 Robert Cudmore
3 Bob Cudmore
4 neuroscience
5 Johns Hopkins Medicine
6 Baltimore
7 David Linden
8 Richard Huganir
9 Marseille
10 France
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curriculum vitae,publications,research,software,images,postdoctoral fellow,linden lab,department of neuroscience,school of medicine,email,research interests,ongoing research interests,links,dept of neuroscience,johns hopkins medicine
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Robert Cudmore's Home Page | robertcudmore.org Reviews

https://robertcudmore.org

Robert Cudmore, Neuroscience, Bob Cudmore, Postdoctoral researcher, Johns Hopkins, Medicine, JHMI, Department of Neuroscience, David Linden, Baltimore, Maryland, Marseille, France, in vivo, two photon, neuroscience

INTERNAL PAGES

robertcudmore.org robertcudmore.org
1

Robert Cudmore's Home Page

http://www.robertcudmore.org/cudmoreCV.html

The Johns Hopkins University. Baltimore, MD USA. Research Associate, Department of Neuroscience. The Johns Hopkins University School of Medicine. Postdoctoral Fellow, Department of Neuroscience. The Johns Hopkins University School of Medicine. Advisor: David Linden, PhD. Postdoctoral Fellow, INSERM UMR 641 Neurobiologie des Canaux Ioniques. Institut Jean Roche, Université de la Méditerranée. Advisor: Dominique Debanne, PhD. Visiting Scientist, The Neuroscience Institute. San Diego, CA.

2

Robert Cudmore's Home Page

http://www.robertcudmore.org/index.html

Robert Cudmore, Department of Neuroscience, Linden Lab, Johns Hopkins University, Baltimore, USA. Robert H. Cudmore, PhD. The Johns Hopkins University. My research is aimed at understanding how experience, disease and aging can alter the structure and function of the brain. I do this using time-lapse in vivo. Please see the images page. Our work on serotonergic axon regeneration was published in Neuron (2016) . Analysis software for 2-Photon Microscopy. And the other for vasculature. Ivana Pesic - Piano ...

3

Robert Cudmore's Home Page

http://www.robertcudmore.org/images.html

How does the structure of the brain change with experience? I am approaching this broad question by imaging neurons, vasculature, and astrocytes in living mice over time-scales of minutes to months. Time-lapse in vivo two-photon images of dendrites and axons of pyramidal Layer V neurons in the motor cortex of a Thy1-GFPm mouse. Ivana Pesic - Piano Lessons, Accompanist, Organist, Translator.

4

Robert Cudmore's Home Page

http://www.robertcudmore.org/links.html

My online photo repository. Last updated 2010. My online video repository. Last updated 2008. Online radio that builds your own station based on your previous listening. Listen to exactly what you want, when you want. Because it is easier to put an interface on Unix than it is to fix windows. Fast cross platform web browsing and eventually a new OS. Programmable analysis and graphing environment. Open source image analysis (a distributiuon of ImageJ). My Dad and hist ever expanding online presence.

5

Robert Cudmore's Home Page

http://www.robertcudmore.org/cudmorePUB.html

View list in PubMed. View list in HubMed. Linden DJ (in review 2016) Cerebral vascular structure in the motor cortex of adult mice is stable and is not altered by voluntary exercise. Journal of Cerebral Blood Flow and Metabolism. Jin Y, Dougherty SE, Wood K, Sun L, Cudmore RH. Abdalla A, Kannan G, Pletnikov M, Hashemi P, Linden DJ (2016) Regrowth of Serotonin Axons in the Adult Mouse Brain Following Injury. Neuron. Zhang Y*, Cudmore RH. Gastrein P, Campanac E, Gasselin C, Cudmore RH. Prinz AA, Cudmore RH.

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TOTAL PAGES IN THIS WEBSITE

6

LINKS TO THIS WEBSITE

blog.cudmore.io blog.cudmore.io

Adding smb shares in linux · Robert Cudmore

http://blog.cudmore.io/post/2016/10/25/Adding-smb-shares-in-linux

Raquo; Google Cloud Platform. Raquo; Prairie scope analysis. Raquo; Adding smb shares in linux. Raquo; Convert .h264 video with ffmpeg. Raquo; uv4l on Raspberry Pi. Raquo; robertcudmore.org. Raquo; github.com/cudmore. Raquo; flickr.com/cudmore. Adding smb shares in linux. Mount a remote folder 10.16.80.212/share into a folder /mnt/datashare. Use /etc/fstab so this remote folder is mounted on every boot. Add a line like this.

blog.cudmore.io blog.cudmore.io

Platformio-teensy-udev-rules · Robert Cudmore

http://blog.cudmore.io/post/2016/09/17/teensy-and-platformio-udev-rules

Raquo; Google Cloud Platform. Raquo; Prairie scope analysis. Raquo; Adding smb shares in linux. Raquo; Convert .h264 video with ffmpeg. Raquo; uv4l on Raspberry Pi. Raquo; robertcudmore.org. Raquo; github.com/cudmore. Raquo; flickr.com/cudmore. Setting udev rules is critical for using platformio and a teensy. Instruction are here. Place 49-teensy.rules (see below) in /etc/udev/rules.d/49-teensy.rules. Make sure .rules file is created with sudo. Platformio - version #gives PlatformIO, version 3.0.1. MODE:...

blog.cudmore.io blog.cudmore.io

VNC in Debian 8 Jessie · Robert Cudmore

http://blog.cudmore.io/post/2016/06/04/VNC-in-Debian-8-Jessie

Raquo; Google Cloud Platform. Raquo; Prairie scope analysis. Raquo; Adding smb shares in linux. Raquo; Convert .h264 video with ffmpeg. Raquo; uv4l on Raspberry Pi. Raquo; robertcudmore.org. Raquo; github.com/cudmore. Raquo; flickr.com/cudmore. VNC in Debian 8 Jessie. Debian 8 Jessie will not run vnc using the gnome desktop. This bug will not be fixed until Debian 9. Solution is to either use KDE or Mate. Desktops. Mate is a fork of Gnome. Pico /home/cudmore/.vnc/xstartup #! Login from a remote machine.

blog.cudmore.io blog.cudmore.io

Convert .h264 video with ffmpeg · Robert Cudmore

http://blog.cudmore.io/post/2016/10/13/Convert-h264-files-with-ffmpeg

Raquo; Google Cloud Platform. Raquo; Prairie scope analysis. Raquo; Adding smb shares in linux. Raquo; Convert .h264 video with ffmpeg. Raquo; uv4l on Raspberry Pi. Raquo; robertcudmore.org. Raquo; github.com/cudmore. Raquo; flickr.com/cudmore. Convert .h264 video with ffmpeg. This bash script will make new copies of all .h264 files in the current working directory. Output files will have 15 frames-per-second (-r 15). Output files will be placed in /mp4/ directory. H264 ; do. Ffmpeg -r 15 -i ".

blog.cudmore.io blog.cudmore.io

uv4l on Raspberry Pi · Robert Cudmore

http://blog.cudmore.io/post/2016/06/05/uv4l-on-Raspberry-Pi

Raquo; Google Cloud Platform. Raquo; Prairie scope analysis. Raquo; Adding smb shares in linux. Raquo; Convert .h264 video with ffmpeg. Raquo; uv4l on Raspberry Pi. Raquo; robertcudmore.org. Raquo; github.com/cudmore. Raquo; flickr.com/cudmore. Uv4l on Raspberry Pi. It is just a matter of time before the people making v4l put the finishing touches on it and it will come standard on linux distributions. On the Raspberry Pi, work is underway on v4l2. Add the following to. Sudo pico /etc/apt/sources.list.

blog.cudmore.io blog.cudmore.io

Compress-images-with-OptiPNG-and-jpegoptim · Robert Cudmore

http://blog.cudmore.io/post/2016/09/24/compress-images-with-OptiPNG-and-jpegoptim

Raquo; Google Cloud Platform. Raquo; Prairie scope analysis. Raquo; Adding smb shares in linux. Raquo; Convert .h264 video with ffmpeg. Raquo; uv4l on Raspberry Pi. Raquo; robertcudmore.org. Raquo; github.com/cudmore. Raquo; flickr.com/cudmore. Lossless compression of png with OptiPNG. And jpg with (jpegoptim)[https:/ github.com/tjko/jpegoptim].

blog.cudmore.io blog.cudmore.io

· Robert Cudmore

http://blog.cudmore.io/tags

Raquo; Google Cloud Platform. Raquo; Prairie scope analysis. Raquo; Adding smb shares in linux. Raquo; Convert .h264 video with ffmpeg. Raquo; uv4l on Raspberry Pi. Raquo; robertcudmore.org. Raquo; github.com/cudmore. Raquo; flickr.com/cudmore. Raquo; 07 Feb 2016. Camera with a REST interface. Raquo; 06 Dec 2015. Raquo; 07 Sep 2015. Plotting with bokeh on the Raspberry Pi. Raquo; 05 Mar 2015. Monitoring mice in their home cage. Raquo; 14 Feb 2014. PyqtGraph to display a .tif stack. Raquo; 14 Aug 2015.

blog.cudmore.io blog.cudmore.io

Prairie scope analysis · Robert Cudmore

http://blog.cudmore.io/post/2016/11/20/Prairie-scope-analysis

Raquo; Google Cloud Platform. Raquo; Prairie scope analysis. Raquo; Adding smb shares in linux. Raquo; Convert .h264 video with ffmpeg. Raquo; uv4l on Raspberry Pi. Raquo; robertcudmore.org. Raquo; github.com/cudmore. Raquo; flickr.com/cudmore. Prairie2tif .py : Convert single image .tif directories (saved by Prairie) into single .tif stacks. BAlignFolder .py : Align on channel 2 (GFP) and apply alignment to channel 1. To Do (understanding how to acquire good images). To Do (Pre-process raw data). Figure...

blog.cudmore.io blog.cudmore.io

Archive · Robert Cudmore

http://blog.cudmore.io/archive

Raquo; Google Cloud Platform. Raquo; Prairie scope analysis. Raquo; Adding smb shares in linux. Raquo; Convert .h264 video with ffmpeg. Raquo; uv4l on Raspberry Pi. Raquo; robertcudmore.org. Raquo; github.com/cudmore. Raquo; flickr.com/cudmore. Mar 11 - Google Cloud Platform. Nov 20 - Prairie scope analysis. Oct 25 - Adding smb shares in linux. Oct 13 - Convert .h264 video with ffmpeg. Sep 24 - Compress-images-with-OptiPNG-and-jpegoptim. Sep 17 - Platformio-teensy-udev-rules. Jun 05 - uv4l on Raspberry Pi.

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14

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Robert Cudmore's Home Page

Robert Cudmore, Department of Neuroscience, Linden Lab, Johns Hopkins University, Baltimore, USA. Robert H. Cudmore. The Johns Hopkins University. I am currently a postdoc at The Johns Hopkins University in Baltimore MD, working in the lab of David Linden. Analysis software for 2-Photon Microscopy. To make these experiments possible, I am developing software. To analyze and track 3D structures (spines, boutons and vasculature) over multiple time-points. This software now has a dedicated documentation site.

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