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rosetta.ahmedmoustafa.io
Genetic Drift
http://rosetta.ahmedmoustafa.io/drift
Simulation of “random” genetic drift. Under complete “neutrality”. This module simulates genetic drift. Under complete neutrality where is no selection for or against the different alleles. Variants). The initial distribution of the variants in the population is random. Depending on the population size. Of only one in the population. Number of variants (alleles):. See also Natural Selection. Created by Ahmed Moustafa. Middot; Code licensed under MIT License.
Permutation Test
http://rosetta.ahmedmoustafa.io/permutation
Interactive demonstration of hypothesis testing. Compute difference between means of two conditions. Combine two conditions into one dataset (to break the association i.e., H. Repeat the following two steps for a large number of times (e.g., 1,000). Sample two datasets from combined dataset without replacement. Compute difference between means of two sampled (permuted) datasets. Adopted from an example by Śaunak Sen. Marker. We want to detect association between the. See also Bootstrap Resampling.
Natural Selection
http://rosetta.ahmedmoustafa.io/selection
This module simulates the impact of natural selection. On the frequencies of alleles. Depending on their relative fitnesses. And assuming selection is the only acting evolutionary. Number of generations (. See also Genetic Drift. Created by Ahmed Moustafa. Middot; Code licensed under MIT License. Middot; Documentation licensed under CC BY 4.0.
Bootstrap Resampling
http://rosetta.ahmedmoustafa.io/bootstrap
Interactive demonstration of hypothesis testing. Adopted from an example by Śaunak Sen. Systolic blood pressure was measured in progeny from a backcross between two mouse strains. 50 (randomly chosen) mice were genotyped at the. Marker. We want to detect association between the. Marker genotype and blood pressure. The values show the systolic blood pressure (in mm of Hg) by the marker genotype,. Level of Significance (α):. This is the bare R code with number of replicates =. And α =.
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