rubinsteyn.com

Alex Rubinsteyn

Machine learning and data analysis. The messy business of translating programs into faster programs. Python interface to the Ensembl. Library for analyzing and inferring effects of genomic variants in Python. Python library and commandline tool for predicting cancer epitopes from mutation and RNA expression data. Python interface to immunology and bioinformatics datasets. An optimizing just-in-time compiler for an array-oriented subset of Python. GPU Random Forest library for Python. October 27th, 2014).

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Alex Rubinsteyn | rubinsteyn.com Reviews

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Machine learning and data analysis. The messy business of translating programs into faster programs. Python interface to the Ensembl. Library for analyzing and inferring effects of genomic variants in Python. Python library and commandline tool for predicting cancer epitopes from mutation and RNA expression data. Python interface to immunology and bioinformatics datasets. An optimizing just-in-time compiler for an array-oriented subset of Python. GPU Random Forest library for Python. October 27th, 2014).

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3 φ node

4 projects

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6 gene annotation database

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Alex Rubinsteyn | rubinsteyn.com Reviews

https://rubinsteyn.com

Machine learning and data analysis. The messy business of translating programs into faster programs. Python interface to the Ensembl. Library for analyzing and inferring effects of genomic variants in Python. Python library and commandline tool for predicting cancer epitopes from mutation and RNA expression data. Python interface to immunology and bioinformatics datasets. An optimizing just-in-time compiler for an array-oriented subset of Python. GPU Random Forest library for Python. October 27th, 2014).

INTERNAL PAGES

rubinsteyn.com

1

GenePool

http://www.rubinsteyn.com/genepool

GenePool: Evolutionary Optimization in OCaml. GenePool is a framework for writing evolutionary optimization algorithms in OCaml. This library is not a complete solution but rather is a generic skeleton which takes care of the plumbing and nuisances of optimization. You provide GenePool with functions that give meaning to fitness and reproduction and after a specified number of generation, GenePool returns an array of the best "genomes" it evolved. You can download the GenePool source. Some parameters (ie...

2

Template Insanity

http://www.rubinsteyn.com/text/template_insanity.html

November 10, 2007. In the latest edition of the Monad Reader. Wrote a solution to Instant Insanity. A brief introduction to C metaprogramming. Since not many people are familiar with C 's capacity for compile-time computation, it's probably worthwhile to give a short introduction to programming with templates. If you're already a dark wizard of metaprogramming, skip along to the next section. Now, templates were added to C to enable generic programming (much to the delight of Alexander Stepanov. There ar...

3

The Dating Game

http://www.rubinsteyn.com/text/dating.html

November 12, 2008. Tips for Solving the Dating Game. Or, a machine learning primer. In the dating game. You play the role of a matchmaker trying to satisfy a picky dater. Much like in real life, suitors (or suitresses) are reduced to a real-valued vector of. Le; 100) features. Each element of the vector is in the range. And corresponds to some characteristic of the candidate. The picky dater (called "person" or. And we are guaranteed that the negative feature weights will sum to. Initially, you are given.

4

Texture Synthesis

http://www.rubinsteyn.com/comp_photo/texture

Efros and Leung's Algorithm. Matlab source: synth.m. I implemented this as a homework for Rob Fergus. Computational Photography class. If you're interested in this sort of thing, check out the course website. Which has many more interesting papers. Reference: Texture Synthesis by Non-parametric Sampling. 3 x 3 window. 5 x 5 window. 7 x 7 window. 11 x 11 window. 15 x 15 window. 19 x 19 window. Parametric Synthesis: Not So Great. Matlab source: synth gmm.m. 3 x 3 window. 5 x 5 window. 7 x 7 window.

5

Programming Languages (Fall 2011) - Homework 3 Solution

http://www.rubinsteyn.com/pl_fall_2011/recitation.html

Programming Languages - Fall 2011. Programming Languages Recitation Links. Grammars, Parsing, and Formal Languages. What's a formal language? How do we generate strings from a grammar? BNF and EBNF: What are they and how do they work? Impressively short grammar for the syntax of the Python programming language. Simple Models of Computation. Computational models like the Lambda Calculus. And the Universal Turing Machine. What does it mean to compute? Compiling to lambda-calculus: Turtles all the way down.

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cater.cs.nyu.edu

Systems@NYU

http://cater.cs.nyu.edu/People.html

A partial group picture circa 2011. Peking University visitor, 2014. Tsinghua visitor, 2014. MS 2015, Upthere. MS 2015, Upthere. PhD 2013 (Mt Sinai). PhD 2013 (Co-founder of Entrupy). PhD 2011 (Assistant Prof. at NYUAD). Peking U visitor 2012.

pypi.python.org

parakeet 0.23.2 : Python Package Index

https://pypi.python.org/pypi/parakeet

RSS (latest 40 updates). RSS (newest 40 packages). Parakeet 0.23.2. Parakeet-0.23.2.tar.gz. Runtime compiler for numerical Python. Parakeet is a runtime accelerator for an array-oriented subset of Python. If you’re doing a lot of number crunching in Python, Parakeet may be able to significantly speed up your code. To accelerate a function, wrap it with Parakeet’s @jit. You should be able to install Parakeet from its PyPI package. Parakeet is written for Python 2.7 (sorry internet) and depends on:. Parake...

news.cs.nyu.edu

Systems@NYU

http://news.cs.nyu.edu/People.html

A partial group picture circa 2011. Peking University visitor, 2014. Tsinghua visitor, 2014. MS 2015, Upthere. MS 2015, Upthere. PhD 2013 (Mt Sinai). PhD 2013 (Co-founder of Entrupy). PhD 2011 (Assistant Prof. at NYUAD). Peking U visitor 2012.

github.com

GitHub - iskandr/parakeet: Runtime compiler for numerical Python

https://github.com/iskandr/parakeet

Runtime compiler for numerical Python. Http:/ www.parakeetpython.com. Use Git or checkout with SVN using the web URL. Sep 18, 2015. Failed to load latest commit information. Merge branches 'master' and 'dev' into dev. Dec 17, 2013. IndexMap fusion is wimpier but at least does the right thing. Mar 24, 2014. IndexMap fusion is wimpier but at least does the right thing. Mar 24, 2014. Stripped down IndexMap fusion just to get it working. Mar 24, 2014. Dec 31, 2012. Maybe just skip scipy on travis for now.

tr8dr.wordpress.com

About | Tr8dr

https://tr8dr.wordpress.com/about

These are my musings about strategies, statistics, computer science, numerical techniques, etc. I am a quant / developer, now trader, living in the New York area, just back from the UK, where I headed an algo pricing and strategies team. So I was sucked into it. The problems were interesting and the software on wall street was still nascent / bleading-edge. Things changed gradually, I tired of it, and left the street to pursue other interests — for a while. The idea of systematic trading always appealed ...

cater.news.cs.nyu.edu

Systems@NYU

http://cater.news.cs.nyu.edu/People.html

A partial group picture circa 2011. Peking University visitor, 2014. Tsinghua visitor, 2014. MS 2015, Upthere. MS 2015, Upthere. PhD 2013 (Mt Sinai). PhD 2013 (Co-founder of Entrupy). PhD 2011 (Assistant Prof. at NYUAD). Peking U visitor 2012.

friendstore.news.cs.nyu.edu

Systems@NYU

http://friendstore.news.cs.nyu.edu/People.html

A partial group picture circa 2011. Peking University visitor, 2014. Tsinghua visitor, 2014. MS 2015, Upthere. MS 2015, Upthere. PhD 2013 (Mt Sinai). PhD 2013 (Co-founder of Entrupy). PhD 2011 (Assistant Prof. at NYUAD). Peking U visitor 2012.

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rubinsteyn.com

Alex Rubinsteyn

Machine learning and data analysis. The messy business of translating programs into faster programs. Python interface to the Ensembl. Library for analyzing and inferring effects of genomic variants in Python. Python library and commandline tool for predicting cancer epitopes from mutation and RNA expression data. Python interface to immunology and bioinformatics datasets. An optimizing just-in-time compiler for an array-oriented subset of Python. GPU Random Forest library for Python. October 27th, 2014).

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