bioinfo.psych.ac.cn
Bioinformatics Lab, Institute of Psychology, CAS
http://bioinfo.psych.ac.cn/EN/index.jsp
GSEA4GWAS v2: a web server for functional analysis of SNPs in trait-associated pathways identified from genome-wide association study. ICSNPathway: Identify candidate Causal SNPs and Pathways from genome-wide association study by one analytical framework. Gene Set Enrichment Analysis for Genome-Wide Association Study. RVarBase: an Updated Database for Regulatory Features of Human Variants. RSNPBase: A Database for Curated Regulatory SNPs. MK4MDD: Multi-level Knowledge Base for Major Depressive Disorder.
rsnp.psych.ac.cn
rSNPBase
http://rsnp.psych.ac.cn/upload.do
We are always welcome users' feedback to help us improve the services we provide.If you have any comments or suggestions please let us know and fill the form below. Last update: March 26, 2014.
rsnp.psych.ac.cn
rSNPBase
http://rsnp.psych.ac.cn/tutorial.do
Figure 1 Data access of rSNPBase. Search results of rSNPBase are summarized in a table on 'Search result' page (Figure 2), in which, the regulatory features of retrieved SNPs in four regulation manners are summarized as 'Yes' or 'No'. Figure 2 Search result page of rSNPBase. Title of the table:. RSNPBase identified regulatory SNPs. SNP in strong LD (r2 0.8) with rSNPs. SNP involved in proximal transcriptional regulation. SNP involved in distal transcriptional regulation. SNP within mature miRNA. Simply c...
rsnp.psych.ac.cn
rSNPBase
http://rsnp.psych.ac.cn/aboutus.do
If you have any questions while using the site, please feel free to Contact Us. Institute of Psychology, CAS. Bioinformatics Lab, Institute of Psychology, CAS. Last update: March 26, 2014.
rsnp.psych.ac.cn
rSNPBase
http://rsnp.psych.ac.cn/datacontent.do
RSNPBase includes rSNPs, LD-proxies of rSNPs, and genes that are potentially regulated by rSNPs. Experimentally supported regulatory elements were collected and utilized to annotate the regulatory feature of rSNPs. Regulation-related spatio-temporal information and experimental eQTL evidence are used as data labels for involoved SNPs. The data for rSNPBase(as of August 1, 2013) are shown in Table 1. Table 1 Data content of rSNPBase as of August 1, 2013. Genome-wide human SNPs and genes were filtered and ...
bioinfo.psych.ac.cn
中国科学院心理所生物信息实验室
http://bioinfo.psych.ac.cn/CN/Our_db.jsp
Zhang, K.L.*, Chang, S.H.*, Guo, L.Y., Wang, J. (2014) I-GSEA4GWAS v2: a web server for functional analysis of SNPs in trait-associated pathways identified from genome-wide association study. Zhang, K.L, Chang, S.H., Cui, S.J., Guo, L.Y., Zhang, L.Y., and Wang, J., 2011 ICSNPathway: identify candidate causal SNPs and pathways from genome-wide association study by one analytical framework. Nucleic Acids Res. 42 (D1): D1033-D1039. doi: 10.1093/nar/gkt1167. Guo, L., Zhang, W., Chang, S., Zhang, ...Zhang, L&...
rsnp.psych.ac.cn
rSNPBase
http://rsnp.psych.ac.cn/index.do
Notice: we have updated rSNPBase to rVarBase, new features and detailed information could be found at http:/ rv.psych.ac.cn. Is a database that provides reliable, comprehensive, and user-friendly regulatory annotations on rSNPs. It will assist researchers in selecting candidate SNPs for further genetic studies (especially for QTL studies), identifying causal variants of certain phenotypes, and exploring in-depth molecular mechanisms. An example for database usage. Last update: March 26, 2014.
