SABLE server can be used for prediction of the protein secondary structure, relative solvent accessibility and trans-membrane domains providing state-of-the-art prediction accuracy.
http://sable.cchmc.org/
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SABLE protein structure prediction server | sable.cchmc.org Reviews
https://sable.cchmc.org
SABLE server can be used for prediction of the protein secondary structure, relative solvent accessibility and trans-membrane domains providing state-of-the-art prediction accuracy.
sable.cchmc.org
SABLE: general information
http://sable.cchmc.org/sable_doc.html
The SABLE Server: General Information. The SABLE server can be used for predicting real valued relative S. S of amino acid residues in proteins, and for improved prediction of secondary structures using evolutionary profiles and predicted relative solvent accessibility of an amino acid residue as a fingerprint of the overall packing. Its stand-alone version is also available. Click here. To go to download page. Notes about accuracy of the results. As for relative solvent accessibility (RSA) prediction, S...
Acknowledgements
http://sable.cchmc.org/acknowledge.html
The following individuals contributed to the development of our web resources and related research projects:. Minus; SABLE, SIFT, MINNOU. Minus; Pneumocystis Genome Project. Minus; SABLE, MINNOU, CINTENY, POLYVIEW-2D/3D/MM, SCORPPION, SIFT, SPPIDER, Pneumocystis Genome Project, RLA and Protein disorder region prediction. Minus; POLYVIEW-2D/3D/MM/CoeViz, SABLE, MINNOU, SPPIDER, SCORPPION, Pneumocystis Genome Project, MutaCYP. Minus; RLA prediction. Minus; Pneumocystis Genome Project. Server from Universit...
Server usage statistics - SABLE
http://sable.cchmc.org/cgi-bin/stat.cgi?SRC=CINTENY
Jun 18, 2003 − Aug 22, 2016. 20516 (by IP), 34038 (by Domain/Email). Maximum requests submitted in one day. 10848 (Dec 30, 2010). Average number of requests per day. Geography of users (latest update on 21 Aug 2016). Data derived using GeoBytes. Click on a country name to view cities, on column headers to resort the table. Cincinnati Children`s Hospital Medical Center. Visit the SABLE server home. Check the usage statistics of other web services of ours:. Protein Structure Visualization Server.
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AP eLab - Methodological Projects
http://aplab.cchmc.org/projects_method.html
E-Laboratory of Aleksey Porollo. These 1D predictions are often the first step to gaining insight into the 3D structure and function of a protein. Accurate prediction of relative solvent accessibilities of amino acid residues in proteins may be used to facilitate protein structure prediction and functional annotation. Toward that goal, we have developed a novel method (SABLE) for improved prediction of relative solvent accessibilities (RSA) ( Ref 1. Trans-membrane domains ( Ref 3. Adamczak R, Porollo A, ...
SpliProt3D - database of structures (and models) of proteins of the human spliceosome
http://iimcb.genesilico.pl/SpliProt3D/home
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. Features of protein regions in the SpliProt3D database. Features of models in the SpliProt3D database. How to cite SpliProt3D database? We carried out a systematic, comprehensive structural bioinformatics analysis of the human spliceosomal proteome. We predicted ordered and disordered regions, established a non-redundant set of experimental models...
POLYVIEW-2D: Documentation
http://polyview.cchmc.org/polyview_doc.html
Terms of use and disclaimer. References to cite the server. Review of protein structure prediction. Analysis of protein complexes. Review of amino acid conservation. Automated annotations using scripts. Pictorial definitions used in POLYVIEW-2D for protein representation. Amino acid residue numeration. H - α and other helices (view 1). H - α and other helices (view 2). E - β-strand or bridge. Relative solvent accessibility (RSA). 0 - completely buried (0-9% RSA),. 9 - fully exposed (90-100% RSA). The POL...
Home page of Jarek Meller
https://folding.cchmc.org/my/home.html
This is home page of Jarek Meller. PhD in computational chemistry, MSc in physics (major in computer physics), MSc in mathematics (major in computer science) and undergraduate education in sociology from the Nicholas Copernicus University in Torun. Was born in Torun in 1473), Poland. As a postdoc, I had been working in the fields of computational chemistry ( Universite Paul Sabatier. Toulouse, France), computational biology ( Hebrew University. Japan) and bioinformatics ( Cornell University.
SIFT: general information
http://sift.cchmc.org/sift_doc.html
The SIFT Server: General Information. Notes about sequence independent filtering tool. Several sequence independent and sequence dependent filters (despite the name of the server :-) are available at present. The following sequence independent filters can be used to filter out structures with non-physical packing: the number of contacts, contact order, and a novel filter based on the shape of interresidue radial distribution function (referred to as the RDF. To go to download page.
Computational Cluster | Research IT Core Services
https://bmi.cchmc.org/resources/clusters/computational-cluster
Installing OpenNX in Mac OS X Lion. Running software the easy way. Mac, Linux and Solaris Support. Biomaterial Tracking and Management (BTM) Core. BMI maintains a Linux-based computational cluster that is accessible from outside the Cincinnati Children's network. The cluster currently has over 700 processing cores and is heterogeneous with both large-memory SMPs as well as low-cost processing nodes. The cluster is Linux-based and the preferred method of access is either SSH or NX. An annual storage charg...
User Testimonials | Research IT Core Services
https://bmi.cchmc.org/resources/user-testimonials
Installing OpenNX in Mac OS X Lion. Running software the easy way. Mac, Linux and Solaris Support. Biomaterial Tracking and Management (BTM) Core. SNPGWA, and Haploview) installed and running on the cluster. Our specific requirements have presented challenges along the way, and the BMI staff has been extremely responsive to our needs. Without the hardware and personnel support from BMI, our research would be much more difficult. Michael Barnes, PhD. Todd Nick, PhD. Ge Zhang, PhD. Douglas Kojetin, PhD.
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Sable Elementary
Go, Slow, Whoa Nutrition. Aurora, CO 80011. View our Data Wall. Keep Your School Safe! APS Registration Online Option. Offers a wide range of services for all identified gifted and talented and high potential students. For more information, visit the AGATE Website. Draft of August 4, 2015, BOE minutes. August 4, 2015, BOE Agenda. June 16, 2015, BOE minutes. Sable’s Vision and Mission. At Sable, we are safe and caring learners who NEVER give up! Goals Aligned to Vision. Where ALL students succeed. Last up...
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Les mains dans le sable
Envoyer à un ami. Les mains dans le sable. Après le sable, la mer. Et le corps se remplit, se remplit, se remplit. Comme si je mettais la main dans le fantôme, la peau transparente traversée, des petites vagues, comme si je venais m'entourer de ma main et doucement m'attraper et me faire venir à moi. A lui. À 00:52 - Commentaires [2]. À 00:48 - Commentaires [2]. Je suis une force en sommeil. À 00:26 - Commentaires [7]. Puis depuis quelques mois, il y a ce garçon en face de moi. Ce garçon que j'aurais...
Sable
SABLE protein structure prediction server
Accurate sequence-based prediction of relative S. Secondary structures and transmembrane domains for proteins of unknown structure. Amino acid sequence (using one letter codes). Query sequence in the FASTA format file. Include real values in the results. Send Psi-Blast results by e-mail. Results in CASP format. E-mail address ( optional. Stand-alone version of SABLE. Accurate sequence-based prediction of relative S. Secondary structures and transmembrane domains for proteins of unknown structure.
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