samtools.github.io
Samtools repositoriesSamtools organisation for next-generation sequencing developers: htslib C API, htsjdk Java API, file format specifications, and samtools/bcftools source code.
http://samtools.github.io/
Samtools organisation for next-generation sequencing developers: htslib C API, htsjdk Java API, file format specifications, and samtools/bcftools source code.
http://samtools.github.io/
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https://samtools.github.io
Samtools organisation for next-generation sequencing developers: htslib C API, htsjdk Java API, file format specifications, and samtools/bcftools source code.
samtools.github.io
Htsjdk by Broad Institute
http://samtools.github.io/htsjdk
A Java API for high-throughput sequencing data (HTS) formats. View the Project on GitHub samtools/htsjdk. A Java API for high-throughput sequencing data (HTS) formats. HTSJDK is an implementation of a unified Java library for accessing common file formats, such as SAM. Used for high-throughput sequencing data. There are also an number of useful utilities for manipulating HTS data. HTSJDK Github Project Page. Project maintained by samtools. Hosted on GitHub Pages — Theme by orderedlist.
Hts-specs by samtools
http://samtools.github.io/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats. View the Project on GitHub samtools/hts-specs. SAM/BAM and related specifications. Is the canonical specification for the SAM (Sequence Alignment/Map) format, BAM (its binary equivalent), and the BAI format for indexing BAM files. SAMtags.tex. Is a companion specification describing the predefined standard optional fields and tags found in SAM, BAM, and CRAM files. Quick references summarize more recent index formats: the tabix.
bcftools
http://samtools.github.io/bcftools/bcftools.html
Bcftools utilities for variant calling and manipulating VCFs and BCFs. Version - version-only] [- help] [. BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. This manual page was last updated 2016-08-05 16:10 BST. And refers to bcftools git version 1.3.1-83-gd26cb61. The BCF1 format output by versions of samtools = 0.1.19 is not. Users ...
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Installation - Rail-RNA v0.2
http://docs.rail.bio/installation
Setting up Amazon Elastic MapReduce. A note on security. Configuring the AWS CLI. How the installer works. Rolling your own installer. Make sure you have a recent ( = 2009) OS X or Linux box with at least 8 GB of RAM. For a no-fuss install, enter. INSTALLER=/var/tmp/$(cat /dev/urandom env LC CTYPE=C tr -cd 'a-f0-9' head -c 32); curl http:/ verve.webfactional.com/rail -o $INSTALLER; python2 $INSTALLER -m true; rm -f $INSTALLER). In a Unix shell (which you open by running the. You can visit the. This insta...
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Samtools repositories
Samtools organisation and repositories. Samtools at GitHub is an umbrella organisation encompassing several groups working on formats and tools for next-generation sequencing:. Contains the specifications of several sequence data formats (SAM, BAM, and CRAM), variant calling data formats (VCF and BCF), and related formats such as indices. Changes to these formats are discussed as issues and pull requests there. C API and high-throughput sequencing tools.
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