sandberg.cmb.ki.se

welcome to sandberg lab

Ludwig Institute for Cancer Research and Department of Cell and Molecular Biology, Karolinska Institutet. Welcome to sandberg lab. We are located at the Ludwig Institute for Cancer Research, Stockholm branch. And the Department of Cell and Molecular Biology. Funded Postdoc Position Available in Bioinformatics (see Positions)! Daniel RamskÃ ld's thesis awarded best PhD thesis at Karolinska Institutet 2014. Independent allelic transcription generates fluctuations in the single-cell transcriptome. It more s...

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welcome to sandberg lab | sandberg.cmb.ki.se Reviews

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Ludwig Institute for Cancer Research and Department of Cell and Molecular Biology, Karolinska Institutet. Welcome to sandberg lab. We are located at the Ludwig Institute for Cancer Research, Stockholm branch. And the Department of Cell and Molecular Biology. Funded Postdoc Position Available in Bioinformatics (see Positions)! Daniel RamskÃ ld's thesis awarded best PhD thesis at Karolinska Institutet 2014. Independent allelic transcription generates fluctuations in the single-cell transcriptome. It more s...

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welcome to sandberg lab | sandberg.cmb.ki.se Reviews

https://sandberg.cmb.ki.se

Ludwig Institute for Cancer Research and Department of Cell and Molecular Biology, Karolinska Institutet. Welcome to sandberg lab. We are located at the Ludwig Institute for Cancer Research, Stockholm branch. And the Department of Cell and Molecular Biology. Funded Postdoc Position Available in Bioinformatics (see Positions)! Daniel RamskÃ ld's thesis awarded best PhD thesis at Karolinska Institutet 2014. Independent allelic transcription generates fluctuations in the single-cell transcriptome. It more s...

INTERNAL PAGES

sandberg.cmb.ki.se

1

Sandberg Lab : Software

http://sandberg.cmb.ki.se/software

Ludwig Institute for Cancer Research and Department of Cell and Molecular Biology, Karolinska Institutet. Resources for analyses of next-generation RNA-Sequencing data. Probe level Alternative Transcripts Analsysis (PLATA). Python scripts for probe level Affymetrix exon array analysis. A python/pyrex implementation of the Bayesian classifier of genomic signatures. 2015 Sandberg Laboratory Karolinska Institutet. Design by Andreas Viklund. Webmaster: Rickard Sandberg -.

2

Sandberg Lab : Funding

http://sandberg.cmb.ki.se/funding

Ludwig Institute for Cancer Research and Department of Cell and Molecular Biology, Karolinska Institutet. The work in this lab is made possibly by the generous support from the following grant agencies:. Stiftelsen for Strategisk Forskning, Framtidens Forskningsledare (FFL4) (2011-2015). European Research Council, Starting Grant (2010-2014). Stiftelsen for Strategisk Forskning, Ingvar Carlsson Award (2008-2010). Ake Wibergs Stiftelse, 2008 Award (2009-2011). 2015 Sandberg Laboratory Karolinska Institutet.

3

Sandberg Lab : Courses

http://sandberg.cmb.ki.se/courses

Ludwig Institute for Cancer Research and Department of Cell and Molecular Biology, Karolinska Institutet. We are teaching one course during 2014. Bioinformatics for Cell Biologists. On graduate level for experimental biologists to learn basic bioinformatics. Bioinformatics for Cell Biologists. On graduate level for experimental biologists to learn basic bioinformatics. Modern DNA sequencing methods. Co-directed with Assist Prof. Sten Linnarsson (MBB, KI). Bioinformatics for Cell Biologists.

4

Sandberg Lab : Data

http://sandberg.cmb.ki.se/data

Ludwig Institute for Cancer Research and Department of Cell and Molecular Biology, Karolinska Institutet. Supplemental Data from published studies:. Efficient and Comprehensive Representation of Uniqueness for Next-Generation Sequencing by Minimum Unique Length Analyses [ Supplemental Data. Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites [ Supplemental Data. Alternative Isoform Regulation in Human Tissue Transcriptomes [ Supplemental Data.

5

MULTo: a unique resource

http://sandberg.cmb.ki.se/multo

Back to Sandberg lab. The manuscript describing our uniqueness resource MULTo has been published [link]. MULTo is a set of python scripts that identifies, stores and retrieves the minimum length required at each genomic position to be unique across the genome or transcriptome. We have computed the minimum unique length (in the range between 20-255 nts) and stored them in a set of binary files (one per chromosome). Why use MULTo files? How to use MULTo files? Genomic Minimum Unique Length Files:. Refseq (...

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dbrm.se

DBRM | People

http://www.dbrm.se/people.html

Professor, Director of DBRM. 2014 DBRM, webmaster: Rickard Sandberg Back to Top.

ki.mynetworkglobal.com

Postdoctoral research fellows in large-scale single cell RNA-seq

https://ki.mynetworkglobal.com/se/what:job/jobID:65326/where:4

Postdoctoral research fellows in large-scale single cell RNA-seq. Hiring in process/Finished, not possible to apply. Karolinska Institutet, Institutionen för medicin, Huddinge. Karolinska Institutet, Integrated Cardio Metabolic Centre (ICMC), Dept Medicine and Dept Cell Mol Biol. We seek three outstanding researchers to work on a large-scale single-cell transcriptome project on metabolic tissues (liver, heart, kidney and vasculature), within the lab of Rickard Sandberg (Karolinska Institutet,. ICMC is a ...

oligonucleotide.de

biomers.net » Oligos, Oligonucleotide

http://www.oligonucleotide.de/tag/biomers-net

BMN quencher series for qPCR probes. Kommentare deaktiviert für BMN quencher series for qPCR probes. Biomers.net recently introduced two new quencher molecules: BMN-Q590 and BMN-Q650. Together with BMN-Q460 and BMN-Q530 /BMN-Q535 a quencher set spanning the whole relevant spectrum for qPCR probes is now available:. BMN-Q460: Quenching range 400 -530 nm. BMN-Q535: Quenching range 480 -580 nm. BMN-Q590: Quenching range 550 -650 nm. BMN-Q650: Quenching range 550 -750 nm. Tagged with: biomers.net. This new q...

oligonucleotide.de

Oligonucleotide » Oligos, Oligonucleotide

http://www.oligonucleotide.de/tag/oligonucleotide

Literature highlight: Smart-seq2 protocol. Kommentare deaktiviert für Literature highlight: Smart-seq2 protocol. Simone Picelli, Omid R Faridani, Åsa K Björklund, Gösta Winberg, Sven Sagasser and Rickard Sandberg, Full-length RNA-seq from single cells using Smart-seq2,. Describe a detailed protocol with improved sensitivity and accuracy for transcriptome analysis from single cells comprising the generation of full-length cDNA and sequencing libraries. Oligonucleotides are available from biomers.net.

oligonucleotide.de

Smart-seq » Oligos, Oligonucleotide

http://www.oligonucleotide.de/tag/smart-seq

Literature highlight: Smart-seq2 protocol. Kommentare deaktiviert für Literature highlight: Smart-seq2 protocol. Simone Picelli, Omid R Faridani, Åsa K Björklund, Gösta Winberg, Sven Sagasser and Rickard Sandberg, Full-length RNA-seq from single cells using Smart-seq2,. Describe a detailed protocol with improved sensitivity and accuracy for transcriptome analysis from single cells comprising the generation of full-length cDNA and sequencing libraries. Oligonucleotides are available from biomers.net.

oligonucleotide.de

Literature highlight: Smart-seq2 protocol » Oligos, Oligonucleotide

http://www.oligonucleotide.de/literature-highlight-smart-seq2-protocol

Literature highlight: Smart-seq2 protocol. Simone Picelli, Omid R Faridani, Åsa K Björklund, Gösta Winberg, Sven Sagasser and Rickard Sandberg, Full-length RNA-seq from single cells using Smart-seq2,. Describe a detailed protocol with improved sensitivity and accuracy for transcriptome analysis from single cells comprising the generation of full-length cDNA and sequencing libraries. Oligonucleotides are available from biomers.net. Tagged with: biomers.net. Sorry, the comment form is closed at this time.

oligonucleotide.de

Allgemein » Oligos, Oligonucleotide

http://www.oligonucleotide.de/category/allgemein

DoubleQuenched Probes, Update BMN-Q620. Kommentare deaktiviert für DoubleQuenched Probes, Update BMN-Q620. Several months ago, biomers.net has introduces the quencher molecule BMN-Q535 for the synthesis of double quenched probes with Fam, Hex or Joe. Due to the second quencher near the 5′-end of the probe a significant noise and background reduction is achieved, especially in the case of longer probes. BMN quencher series for qPCR probes. Kommentare deaktiviert für BMN quencher series for qPCR probes.

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sandberg.cmb.ki.se

welcome to sandberg lab

Ludwig Institute for Cancer Research and Department of Cell and Molecular Biology, Karolinska Institutet. Welcome to sandberg lab. We are located at the Ludwig Institute for Cancer Research, Stockholm branch. And the Department of Cell and Molecular Biology. Funded Postdoc Position Available in Bioinformatics (see Positions)! Daniel RamskÃ ld's thesis awarded best PhD thesis at Karolinska Institutet 2014. Independent allelic transcription generates fluctuations in the single-cell transcriptome. It more s...

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