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iNformatics and Computing

Monday, June 7, 2010. For anyone who is new to PCA and would like to know the math behind it, these are the two papers one must probably read. One is a tutorial by Lindsay. I.Smith. And another is a very good paper by Jonathan Shlens. In R, prcomp(). Once the PCA is performed usually the results are interpreted by plotting scatter plots. And usually PC1, PC2, PC3 are the three components considered as they most of the times have all the variation in the data expressed. A biplot is a scatter plot which al...

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iNformatics and Computing | sashikiranchalla.blogspot.com Reviews

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Monday, June 7, 2010. For anyone who is new to PCA and would like to know the math behind it, these are the two papers one must probably read. One is a tutorial by Lindsay. I.Smith. And another is a very good paper by Jonathan Shlens. In R, prcomp(). Once the PCA is performed usually the results are interpreted by plotting scatter plots. And usually PC1, PC2, PC3 are the three components considered as they most of the times have all the variation in the data expressed. A biplot is a scatter plot which al...

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iNformatics and Computing | sashikiranchalla.blogspot.com Reviews

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Monday, June 7, 2010. For anyone who is new to PCA and would like to know the math behind it, these are the two papers one must probably read. One is a tutorial by Lindsay. I.Smith. And another is a very good paper by Jonathan Shlens. In R, prcomp(). Once the PCA is performed usually the results are interpreted by plotting scatter plots. And usually PC1, PC2, PC3 are the three components considered as they most of the times have all the variation in the data expressed. A biplot is a scatter plot which al...

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sashikiranchalla.blogspot.com

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iNformatics and Computing: December 2009

http://sashikiranchalla.blogspot.com/2009_12_01_archive.html

Thursday, December 3, 2009. Correct way of Shutting down Virtuoso server. Here is the correct way to shut down the virtuoso server. At the SQL prompt type SHUTDOWN. This is the normal way of shutting down the virtuoso server. For more information read at http:/ docs.openlinksw.com/virtuoso/isql.html#invokingisql. Subscribe to: Posts (Atom). Correct way of Shutting down Virtuoso server. View my complete profile.

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iNformatics and Computing: Links to Installing Virtuoso on Windows

http://sashikiranchalla.blogspot.com/2010/03/links-to-installing-virtuoso-on-windows.html

Wednesday, March 10, 2010. Links to Installing Virtuoso on Windows. In one of my earlier posts I wrote about installing Virtuoso triple store on Unix. In this post I thought I will put the links here for my future reference. 32-bit or 64-bit binary files are available here. Installation steps are very well documented here. However do the Setup DSN only after creating a windows service for the default database. Subscribe to: Post Comments (Atom). Links to Installing Virtuoso on Windows.

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iNformatics and Computing: PCA & Biplots

http://sashikiranchalla.blogspot.com/2010/06/pca-biplots.html

Monday, June 7, 2010. For anyone who is new to PCA and would like to know the math behind it, these are the two papers one must probably read. One is a tutorial by Lindsay. I.Smith. And another is a very good paper by Jonathan Shlens. In R, prcomp(). Once the PCA is performed usually the results are interpreted by plotting scatter plots. And usually PC1, PC2, PC3 are the three components considered as they most of the times have all the variation in the data expressed. A biplot is a scatter plot which al...

4

iNformatics and Computing: January 2010

http://sashikiranchalla.blogspot.com/2010_01_01_archive.html

Wednesday, January 27, 2010. Schema less database: CouchDB. CouchDB is a schema less , document oriented database. Documents are in JSON format. Here is a nice video. A good summary on CouchDb here. Here is the CouchDB. PubCouch " : A CouchDB interface to PubChem : posted by Rich on his blog here. Subscribe to: Posts (Atom). Schema less database: CouchDB. View my complete profile.

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iNformatics and Computing: Cluster HeatMaps

http://sashikiranchalla.blogspot.com/2010/02/cluster-heatmaps.html

Sunday, February 28, 2010. I had heard of HeatMaps, but heard of Cluster HeatMaps very recently only when I had to generate one. It is being used a lot in Bioinformatics for gene expression studies. Weinstein describes HeatMaps as following: (taken from here. I could not, for long time figure out how exactly they are generated. Reading here. Nice tutorial on R and Bioconductor). Subscribe to: Post Comments (Atom). Hierarchical Clustering in R. Given an InChI how to get its 3D co-ordinates.

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sashikiranchalla.blogspot.com

iNformatics and Computing

Monday, June 7, 2010. For anyone who is new to PCA and would like to know the math behind it, these are the two papers one must probably read. One is a tutorial by Lindsay. I.Smith. And another is a very good paper by Jonathan Shlens. In R, prcomp(). Once the PCA is performed usually the results are interpreted by plotting scatter plots. And usually PC1, PC2, PC3 are the three components considered as they most of the times have all the variation in the data expressed. A biplot is a scatter plot which al...

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