seqan.de
SeqAn- The C++ template library for sequence analysis.
http://www.seqan.de/
- The C++ template library for sequence analysis.
http://www.seqan.de/
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SeqAn | seqan.de Reviews
https://seqan.de
- The C++ template library for sequence analysis.
SeqAn Documentation
SeqAn 2.4.0. SeqAn 2.3.2. SeqAn 2.3.1. SeqAn 2.3.0. SeqAn 2.2.0. SeqAn 2.1.1. SeqAn 2.1.0. SeqAn 2.0.2. SeqAn 2.0.1. SeqAn 2.0.0. SeqAn 1.4.2. SeqAn 1.4.1. SeqAn 1.4.0. SeqAn 3.0.0-master (user). SeqAn 3.0.0-master (developer).
Packages | SeqAn
The following packages contain SeqAn library headers and their HTML API documentation. The following packages contain the whole SeqAn repository. The following packages contain individual SeqAn apps. Last Update Wed, 11 Feb 2015 16:40:45 UTC.
seqan.de
Gustaf – Seqan
http://www.seqan.de/projects/gustaf
Large-scale population and disease association studies have shown the importance as well as the difficulty of detecting structural variants (SVs) in genomic and also transcriptomic sequencing data. Although being very fast and precise, current read mapping tools usually fail to map sequencing reads that cross SV breakpoints or exon-exon boundaries. These events cause one or even multiple splits in the read-to-reference alignment, with parts of the read mapping to various locations on the referenc...
Latest News – Seqan
http://www.seqan.de/news
SEQAN 2.2 RELEASED. We are pleased to announce the release of version 2.2 of the SeqAn library and updated versions of the official SeqAn-based applications. New features include the preliminary addition of a …. SeqAn 2.1.0 released. We are very pleased to announce the immediate availability of SeqAn-2.1.0! The new version contains a new module for BLAST e-value statistics and I/O, as well as support for Journaled …. SeqAn in de.NBI. SeqAn 2.0 released. Seqan is an open source C library of efficient algo...
jst – Seqan
http://www.seqan.de/projects/jst
Share This Story, Choose Your Platform! Seqan is an open source C library of efficient algorithms and data structures for the analysis of sequences with the focus on biologycal data.
LAMBDA – Seqan
http://www.seqan.de/projects/lambda
If you are not redirected automatically, go to http:/ seqan.github.io/lambda. Lambda is a local aligner optimized for many query sequences and searches in protein space. It is compatible to BLAST, but much faster than BLAST and many other comparable tools. The manual, build instructions and much more are available in the WIKI. View source code and README on GitHub. Lambda: the local aligner for massive biological data. Hannes Hauswedell, Jochen Singer, Knut Reinert; Bioinformatics 2014 30 (17): i349-i355.
Mason – Seqan
http://www.seqan.de/projects/mason
View the source code and README on GitHub. Holtgrewe, M. (2010). Mason a read simulator for second generation sequencing data. Technical Report TR-B-10-06, Institut für Mathematik und Informatik, Freie Universität Berlin. For questions, comments, or suggestions please contact:. Share This Story, Choose Your Platform! Seqan is an open source C library of efficient algorithms and data structures for the analysis of sequences with the focus on biologycal data.
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bs_tools | Packages | SeqAn
http://packages.seqan.de/bs_tools
Which version should I choose? Unless you have a very good reason, pick the newest version. Which architecture should I choose? For most people the sse4. Package works and is recommended. Try that first. If it doesn't work, pick the 64bit. Package and if that doesn't work, try the 32bit one. If you have a rather new CPU and an avx2. Package is available, you can try that, it will have an even better performance. Which format should I choose? Will this work on all versions of my operating system?
masai | Packages | SeqAn
http://packages.seqan.de/masai
Which version should I choose? Unless you have a very good reason, pick the newest version. Which architecture should I choose? For most people the sse4. Package works and is recommended. Try that first. If it doesn't work, pick the 64bit. Package and if that doesn't work, try the 32bit one. If you have a rather new CPU and an avx2. Package is available, you can try that, it will have an even better performance. Which format should I choose? Will this work on all versions of my operating system?
insegt | Packages | SeqAn
http://packages.seqan.de/insegt
Which version should I choose? Unless you have a very good reason, pick the newest version. Which architecture should I choose? For most people the sse4. Package works and is recommended. Try that first. If it doesn't work, pick the 64bit. Package and if that doesn't work, try the 32bit one. If you have a rather new CPU and an avx2. Package is available, you can try that, it will have an even better performance. Which format should I choose? Will this work on all versions of my operating system?
fx_tools | Packages | SeqAn
http://packages.seqan.de/fx_tools
Which version should I choose? Unless you have a very good reason, pick the newest version. Which architecture should I choose? For most people the sse4. Package works and is recommended. Try that first. If it doesn't work, pick the 64bit. Package and if that doesn't work, try the 32bit one. If you have a rather new CPU and an avx2. Package is available, you can try that, it will have an even better performance. Which format should I choose? Will this work on all versions of my operating system?
alf | Packages | SeqAn
http://packages.seqan.de/alf
Which version should I choose? Unless you have a very good reason, pick the newest version. Which architecture should I choose? For most people the sse4. Package works and is recommended. Try that first. If it doesn't work, pick the 64bit. Package and if that doesn't work, try the 32bit one. If you have a rather new CPU and an avx2. Package is available, you can try that, it will have an even better performance. Which format should I choose? Will this work on all versions of my operating system?
indel_simulator | Packages | SeqAn
http://packages.seqan.de/indel_simulator
Which version should I choose? Unless you have a very good reason, pick the newest version. Which architecture should I choose? For most people the sse4. Package works and is recommended. Try that first. If it doesn't work, pick the 64bit. Package and if that doesn't work, try the 32bit one. If you have a rather new CPU and an avx2. Package is available, you can try that, it will have an even better performance. Which format should I choose? Will this work on all versions of my operating system?
BioBuilds.org » BioBuilds 2013.09
https://biobuilds.org/tools-in-biobuilds/biobuilds-1
Open Source informatics tools that Just Work. Support & Contracts. September 3, 2013. X86 64 Linux, x86 64 OS X. X86 64 Linux, x86 64 OS X. X86 64 Linux, x86 64 OS X. X86 64 Linux, x86 64 OS X. X86 64 Linux, x86 64 OS X. X86 64 Linux, x86 64 OS X. X86 64 Linux, x86 64 OS X. X86 64 Linux, x86 64 OS X. X86 64 Linux, x86 64 OS X. X86 64 Linux, x86 64 OS X. Stay connected: Register for updates. 169; 2016 BioBuilds.org.
References — SeqAn master documentation
http://seqan.readthedocs.io/en/master/zreferences.html
Mohamed Ibrahim Abouelhoda, Stefan Kurtz, and Enno Ohlebusch. Replacing suffix trees with enhanced suffix arrays. Journal of Discrete Algorithms. 2(1):53 86, 2004. doi:10.1016/S1570-8667(03)00065-0. Alfred V Aho and Margaret J Corasick. Efficient string matching: an aid to bibliographic search. Communications of the ACM. 18(6):333 340, 1975. doi:10.1145/360825.360855. Stephen F Altschul, Warren Gish, Webb Miller, Eugene W Myers, and David J Lipman. Basic local alignment search tool. Paolo Ferragina and G...
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SEQA Lab | SCAD Sequential Art
Grad Lab Podcast #2. Here is the next update for the new Grad Lab podcast. Enjoy! Grad Lab Podcast #2 https:/ soundcloud.com/user-347620522/2-17-16-mixdown. Hey folks, While the SEQALab podcast may be gone, some of the grad students have started up a new podcast about comics that we wanted to share with everyone. Take a listen and watch out for more podcast updates from them. We will be posting the link here to help promote it on a regular […]. Podcast 215: Grad Comics Discussion with Fei Xu. To ease you...
SEQAM
Skip to main navigation. Skip to first column. Skip to second column. Department of Computer Science. Rutgers, The State University of New Jersey. Saturday, 25 July 2015 00:00. CRF / CORF MATLAB toolbox. 3D 2D RGBD Face Tracking. Adobe Flash Player not installed or older than 9.0.115! Adobe Flash Player not installed or older than 9.0.115! Spontaneous facial expression recognition and intensity estimation - CVPR'12. Adobe Flash Player not installed or older than 9.0.115! Saturday, 25 July 2015 00:00.
seqamlab.com
SeqAn
Yara – Yet another read aligner. Prof Dr. Knut Reinert. SeqAn is an open source C library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance. Programming Language: C 98. BMC Bioinformatics, 9:11, 2008.
SeqAn Manual — SeqAn master documentation
Welcome to the manual pages for the SeqAn library! SeqAn is a C template library for the analysis of biological sequences. As such, it contains algorithms and data structures for. String representation and their manipluation,. Online and indexed string search,. Efficient I/O of bioinformatics file formats,. Sequence alignments, and. Many, many more. Which is the standard template library defined by the ISO C committee. The rest will be discussed in the subsequent tutorials step by step. Please note, that...
seqannotationstudio.codeplex.com
DNA Sequence Annotation Studio - Home
Project Hosting for Open Source Software. DNA Sequence Annotation Studio. By clicking Delete, all history, comments and attachments for this page will be deleted and cannot be restored. Change History (all pages). Is the process of (a). Identifying the locations/segments of genes. And other specific locations that are of imporatance in a DNA. O make sense of it. DNA and RNA Sequence Annotation Studio is a very useful sequence annotation visualization and modification tool and can be used to perform the f...
SEQanswers Home
You are currently viewing the SEQanswers forums as a guest, which limits your access. Click here to register now. And join the discussion. Raquo; Site Navigation. Raquo; About SEQanswers. Raquo; Next Gen Summaries. Raquo; Instrument Map. Raquo; Log in. Not a member yet? Raquo; Online Users: 211. 4 members and 207 guests. Most users ever online was 2,461, 09-20-2015 at 12:38 PM. Welcome to our newest member, Andres Ribone. Raquo; New Posts. Title, Username, and Date. P-value and fold change. DDoS scans en...
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