SEQUENCETAGDB.INFO

TAGdb :: Applied Bioinformatics Group

Welcome to ACPFG Bioinformatics TAGdb. This service performs BLAST alignment between a single query and short pair reads of selected species. Please reference this paper in your publications. Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. Plant Methods 6:19, 2010. Please enter a valid email address. Your result will be sent to the specified address.

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TAGdb :: Applied Bioinformatics Group | sequencetagdb.info Reviews

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Welcome to ACPFG Bioinformatics TAGdb. This service performs BLAST alignment between a single query and short pair reads of selected species. Please reference this paper in your publications. Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. Plant Methods 6:19, 2010. Please enter a valid email address. Your result will be sent to the specified address.

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2 test sequences

3 note

4 sequence data

5 either

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7 species selection

8 barley

9 brassica

10 chickpea

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TAGdb :: Applied Bioinformatics Group | sequencetagdb.info Reviews

https://sequencetagdb.info

Welcome to ACPFG Bioinformatics TAGdb. This service performs BLAST alignment between a single query and short pair reads of selected species. Please reference this paper in your publications. Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. Plant Methods 6:19, 2010. Please enter a valid email address. Your result will be sent to the specified address.

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sequencetagdb.info

1

TAGdb :: Applied Bioinformatics Group

http://www.sequencetagdb.info/tagdb/cgi-bin/help

ACPFG TAGdb Help Pages. This is a guide for using TAGdb. Click on a link below to view help for that topic. Accessing Specific Tag Information. All short read libraries were generated by the ACPFG using Illumina Solexa GAII sequencing technologies using standard methods. The following table explains the library name abbreviations of libraries generated by the ACPFG:. Wheat, Chinese spring. Wheat, chromosome 7DS. Reference Data (Illumina Data):. Short paired-read library selection. The 7DS wheat libraries...

2

TAGdb :: Applied Bioinformatics Group

http://www.sequencetagdb.info/tagdb/cgi-bin/testseq

Download the Wheat 7DS gene sequence. Submit the Wheat 7DS gene sequence for alignment. View pre-submitted alignment results. Applied Bioinformatics Group, School of Agriculture and Food Science. University of Queensland, St Lucia, Australia. TAGdb was created using Mozilla Firefox.

3

TAGdb :: Applied Bioinformatics Group

http://www.sequencetagdb.info/tagdb/cgi-bin/acknowledgementsdisclaimer

Acknowledgements, Requirements and Disclaimer. 1 To ensure complete functionality, users must have their browser enabled with JavaScript. 2 The site has been tested to function in Mozilla Firefox 3.0. The content of this web site is provided for information purposes only. No claim is made as to the accuracy. Of authenticity of the content of the website. In no event will the University of Queensland, its agents,. The site undertake responsibility for assessing the relevance and accuracy of its content.

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wheatgenome.info

Databases :: Wheat Genome

http://www.wheatgenome.info/wheat_genome_databases.php

Individual chromosome arms are being assembled and annotated. They are made publically available as they are produced using the genome viewer GBrowse2. Links to available chromosome arms are below. Wheat GBrowse Viewers and Search. Wheat 7A v2.0. Wheat 7B v2.0. Wheat 7D v2.0. Early Version of Wheat GBrowse databases. Wheat 7AS v0.1. Wheat 7AL v0.1. Wheat 7BS v0.1. Wheat 7BL v0.1. Wheat 7DS v0.1. Wheat 7DL v0.1. Wheat genome assembly BLAST portal. Comparative genome and genetic maps.

cicer.info

Databases (The chickpea project)

http://www.cicer.info/databases.php

Functional annotation can be searched in GBrowse). Sequence Similarity Search Tools. Chickpea genome BLAST portal. Whole genome data and all chromosome arm specific sequence data are available. Containing genome and gene sequences, features and isolationed chromosome alignment). Uwa-V3.0 raw data. Reference genome assembly statistics. V263 draft genome [1]. Uwa-V3.0 draft genome [2]. Total assembly size (Mb). Minimum reported scaffold length (bp). Maximum scaffold length (Kbp). Average gene length (bp).

brassicagenome.net

details :: Brassica Genome

http://www.brassicagenome.net/details.php

Species represent important crops providing a major source of cooking oil, vegetables and condiments across many countries. The species relationship of cultivated Brassicas was described by the triangle of U with the three amphidiploid Brassica. Species B. juncea. AABB, 2n=36), B. napus. AACC, 2n=38) and B. carinata. BBCC, 2n=34) formed through interspecific hybridization between the diploid Brassica. Species, B. rapa. AA, 2n=20), B. nigra. BB, 2n=16) and B. oleracea. The first public Brassica. Including...

brassica.info

brassica.info | Brassica genome sequencing

http://www.brassica.info/resource/sequencing.php

Fodder brassica - USA. Carleton College online lab. Brassica.info Bulletin (old). Guide to Wild Germplasm. UK plant science federation. DNA sequences and genome sequencing. 2014 saw the culmination of a major effort worldwide to generate 'reference' Brassica. Genome sequences, and these are now available online. The current focus is on a range of 're-sequencing' efforts. An early summary is presented below, but as of 2015 requires update. Please let send any relevant information to Graham King. Universit...

appliedbioinformatics.com.au

TAGdb - Applied Bioinformatics Group

http://appliedbioinformatics.com.au/index.php/TAGdb

From Applied Bioinformatics Group. Is a web-based query tool for aligning query sequences to an existing database of paired short read data. The system has been developed using Perl and MySQL and runs on a public web server TAGdb. The interface allows researchers to upload or input a FASTA formatted nucleotide sequence up to 5000 base pairs long for comparison with one or more paired read sequence libraries. TAGdb is a public tool and we are happy to host public data. Pease contact David Edwards.

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sequencetagdb.info

TAGdb :: Applied Bioinformatics Group

Welcome to ACPFG Bioinformatics TAGdb. This service performs BLAST alignment between a single query and short pair reads of selected species. Please reference this paper in your publications. Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. Plant Methods 6:19, 2010. Please enter a valid email address. Your result will be sent to the specified address.

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