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seselab.org

SESE Team, Computational Biology Research Center (CBRC), AIST

Our aim is to develop new algorithms and statistical methods for analyzing Big Data in biology and medicine. The techniques are applied to find new insights of cellular mechanisms in the collaborations with biologists and medical scientists. Updated Mar. 16, 2015. Jun will make a presentation in IPSJ-ONE. Which consists of twenty TED-style lightning talks presented by top-level young computer science researchers in Japan. It is to be broadcast by Nico-Nico Douga. Check it out! Posted Mar. 1, 2015. This i...

http://www.seselab.org/

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SESE Team, Computational Biology Research Center (CBRC), AIST | seselab.org Reviews
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Our aim is to develop new algorithms and statistical methods for analyzing Big Data in biology and medicine. The techniques are applied to find new insights of cellular mechanisms in the collaborations with biologists and medical scientists. Updated Mar. 16, 2015. Jun will make a presentation in IPSJ-ONE. Which consists of twenty TED-style lightning talks presented by top-level young computer science researchers in Japan. It is to be broadcast by Nico-Nico Douga. Check it out! Posted Mar. 1, 2015. This i...
<META>
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1 sese team
2 members
3 publication
4 software
5 data mining
6 for life science
7 news
8 postdoc positions
9 ipsj one
10 and arabidopsis halleri
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SESE Team, Computational Biology Research Center (CBRC), AIST | seselab.org Reviews

https://seselab.org

Our aim is to develop new algorithms and statistical methods for analyzing Big Data in biology and medicine. The techniques are applied to find new insights of cellular mechanisms in the collaborations with biologists and medical scientists. Updated Mar. 16, 2015. Jun will make a presentation in IPSJ-ONE. Which consists of twenty TED-style lightning talks presented by top-level young computer science researchers in Japan. It is to be broadcast by Nico-Nico Douga. Check it out! Posted Mar. 1, 2015. This i...

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seselab.org seselab.org
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Machine Learning Research Group | Contact Us

http://www.seselab.org/software.html

LAMP: multiple testing correction (PNAS, 2013). HomeoRoq: quantification and statistical RNA-seq analysis for allopolyploids (NAR, 2014). COSMOS: detecting large structural variations. ChIP2LAMP: combining ChIP-seq and RNA-seq results for LAMP to detect combinatorial regulations. LAMPLINK: An extension to find statistically significant SNP combinations from GWAS data with PLINK. 2016 Machine Learning Team Back to Top.

2

SESE Lab | HomeoRoq

http://www.seselab.org/homeoroq

HomeoRoq: Homeolog expression analysis softwares. This page provides scripts of HomeoRoq, which allows us to quantify ratios of homeolog expression levels in allopolyploid species, and links to genome sequences and raw reads of A. halleri subsp. gemmifera. And A lyrata subsp. petraea. Both of them are published in the paper ' Genome-wide quantification of homeolog expression ratio revealed non-stochastic gene regulation in synthetic allopolyploid Arabidopsis,'. Usage and source code of HomeoRoq.

3

Machine Learning Research Group | Publication List

http://www.seselab.org/publication.html

Machine Learning Research Group. Note: Currently only Jun's publication is available. Polina Yu Novikova, Nora Hohmann, Viktoria Nizhynska, Takashi Tsuchimatsu, Jamshaid Ali, Graham Muir, Alessia Guggisberg, Tim Paape, Karl Schmid, Olga M Fedorenko, Svante Holm, Torbjörn Säll, Christian Schlötterer, Karol Marhold, Alex Widmer, Jun Sese, Kentaro K Shimizu, Detlef Weigel, Ute Krämer, Marcus A Koch, Magnus Nordborg. Sequencing of the genus Arabidopsis. Molecular Biology and Evolution. Rie Shimizu-Inatsugi, ...

4

Machine Learning Research Team, Artificial Intelligence Research Center (AIRC), AIST

http://www.seselab.org/index.html

Machine Learning for Science. Our aim is to develop new machine learning methods and algorithms for analyzing Big Data in Science. The techniques are applied to find new scientific insights in the collaborations with application domains. Our paper on structural variation detection. Is published from Nucleic Acids Research. Its Japanese press release. Is out from AIST. This is collaborative work with Prof. Takeda's group at Osaka University Medical School. Software. Posted Feb. 2, 2016. This workshop aims...

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