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SIFTER Protein Function Prediction

SIFTER Protein Function Prediction. Phylogeny-based Protein Function Prediction. Elationships) is a statistical approach to predicting protein function that uses a protein family's phylogenetic tree, as the natural structure for representing protein relationships. Learn more ». Find SIFTER predictions for your query proteins. Paste the Uniprot IDs or Accession numbers of your query proteins. Separate IDs by a space, comma, semicolon, or enter one ID per line. Predict for all proteins of a Species. Predic...

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SIFTER Protein Function Prediction | sifter.berkeley.edu Reviews

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SIFTER Protein Function Prediction. Phylogeny-based Protein Function Prediction. Elationships) is a statistical approach to predicting protein function that uses a protein family's phylogenetic tree, as the natural structure for representing protein relationships. Learn more ». Find SIFTER predictions for your query proteins. Paste the Uniprot IDs or Accession numbers of your query proteins. Separate IDs by a space, comma, semicolon, or enter one ID per line. Predict for all proteins of a Species. Predic...

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SIFTER Protein Function Prediction | sifter.berkeley.edu Reviews

https://sifter.berkeley.edu

SIFTER Protein Function Prediction. Phylogeny-based Protein Function Prediction. Elationships) is a statistical approach to predicting protein function that uses a protein family's phylogenetic tree, as the natural structure for representing protein relationships. Learn more ». Find SIFTER predictions for your query proteins. Paste the Uniprot IDs or Accession numbers of your query proteins. Separate IDs by a space, comma, semicolon, or enter one ID per line. Predict for all proteins of a Species. Predic...

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SIFTER Protein Function Prediction

http://sifter.berkeley.edu/about

SIFTER Protein Function Prediction. Phylogeny-based Protein Function Prediction. Elationships) is a statistical approach to predicting protein function that uses a protein family's phylogenetic tree, as the natural structure for representing protein relationships. Learn more ». SIFTER Protein Function Prediction. Genome-Scale implementation of SIFTER. 1969-1980. doi: 10.1101/gr.104687.109. E45 doi: 10.1371/journal.pcbi.0010045. 221-227. doi: 10.1038/nmeth.2340. Sahraeian SME, Luo KR, Brenner SE. 2015...

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SIFTER Protein Function Prediction

http://sifter.berkeley.edu/download

SIFTER Protein Function Prediction. Phylogeny-based Protein Function Prediction. Elationships) is a statistical approach to predicting protein function that uses a protein family's phylogenetic tree, as the natural structure for representing protein relationships. Learn more ». Run SIFTER on your local machine:. You can acesses the user-friendly pipeline for large scale protein function prediction using SIFTER algorithm at SIFTER GitHub page. You can download SIFTER code v2.1.1 here.

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SIFTER Protein Function Prediction

http://sifter.berkeley.edu/help

SIFTER Protein Function Prediction. Phylogeny-based Protein Function Prediction. Elationships) is a statistical approach to predicting protein function that uses a protein family's phylogenetic tree, as the natural structure for representing protein relationships. Learn more ». Help with SIFTER web server. Predict by Protein ID. Predict for all proteins of a Species. Find proteins that have given Functions. Predict for homologs of given Sequences. Search in the precomputed predictions locally. When you p...

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Ecosystems and Networks Integrated with Genes and Molecular Assemblies. General Microbial and Community Data and Tools. Metabolomic Data and Tools. Regulation Data and Tools. New Team Member Registration. Bacterial Communities As Precise Biosensors Of Environmental Damage. Read More ». Desulfovibrio – Methanococcus Co-Evolution. Krona Website →. Read More ». Barcoded Transposon Mutant Library. Barcoded transposon mutant library →. Read More ». Read More ». SLIME: Supervised Learning in Microbial Ecology.

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Protein Function Inference Archives - ENIGMA

http://enigma.lbl.gov/category/protein-function-inference

Ecosystems and Networks Integrated with Genes and Molecular Assemblies. General Microbial and Community Data and Tools. Metabolomic Data and Tools. Regulation Data and Tools. New Team Member Registration. SIFTER: Statistical Inference of Function Through Evolutionary Relationships. SIFTER Website →. Read More ». A US Department of Energy National Laboratory Managed by the University of California. Privacy and Security Notice.

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Events & calendar. BGFA: Bayesian canonical correlation analysis and group factor analysis. Given two or more paired observation matrices, BGFA finds sparse and dense latent components corresponding to observation specific covariances or covariance terms shared across observations. In the case of m=2 observations, this model is the canonical correlation model. The linear latent space is the linear projection that maximizes the correlation across the two observations. The work is described in:. Engelhardt...

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SIFTER Protein Function Prediction

SIFTER Protein Function Prediction. Phylogeny-based Protein Function Prediction. Elationships) is a statistical approach to predicting protein function that uses a protein family's phylogenetic tree, as the natural structure for representing protein relationships. Learn more ». Find SIFTER predictions for your query proteins. Paste the Uniprot IDs or Accession numbers of your query proteins. Separate IDs by a space, comma, semicolon, or enter one ID per line. Predict for all proteins of a Species. Predic...

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