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SIRAH ForcefieldDESCRIPTION HERE
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SIRAH Forcefield | sirahff.com Reviews
https://sirahff.com
DESCRIPTION HERE
sirahff.com
SIRAH Force field for amino acids, solvent and nucleotides ~ SIRAH Forcefield
http://www.sirahff.com/2012/06/sirah-forcefield.html
June 26, 2012. SIRAH Force field for amino acids, solvent and nucleotides. Coarse-grain (CG) techniques applied to molecular simulations allow for a considerable extension of the accessible size and time scales keeping the physical/chemical sense of the fundamental interactions ruling the structure and dynamics of biomolecular systems. SIRAH Tools: mapping, backmapping and visualization of coarse-grained models Bioinformatics, 2016 Link to Article Exploring LacI-DN. SIRAH forcefield in GROMACS. Tutorial ...
The SIRAH Force Field is the cover image of the new JCTC issue! ~ SIRAH Forcefield
http://www.sirahff.com/2015/02/the-sirah-force-field-is-cover-image-of.html
February 10, 2015. The SIRAH Force Field is the cover image of the new JCTC issue! The development of coarse-grained models that reduce the computational cost keeping the essential interactions ruling molecular systems is experiencing an enormous expansion. SIRAH Tools: mapping, backmapping and visualization of coarse-grained models Bioinformatics, 2016 Link to Article Exploring LacI-DN. SIRAH Force field for amino acids, solvent and nucleotides. SIRAH forcefield in GROMACS. Erer Powered by Blogger.
Publications ~ SIRAH Forcefield
http://www.sirahff.com/2012/06/publications.html
June 26, 2012. SIRAH Tools: mapping, backmapping and visualization of coarse-grained models. Exploring LacI-DNA Dynamics by Multiscale Simulations Using the SIRAH Force Field. SIRAH: a structurally unbiased coarse-grained force field for proteins with aqueous solvation and long-range electrostatics. Transferable Mixing of Atomistic and Coarse-Grained Water Models. J Phys. Chem. 2013. Breathing, bubbling, and bending: DNA flexibility from multimicrosecond simulations. Phys. Rev. Lett . 2012. Tutorial 1 Si...
SIRAH forcefield in AMBER ~ SIRAH Forcefield
http://www.sirahff.com/2012/08/sirah-forcefield-in-amber.html
August 1, 2012. SIRAH forcefield in AMBER. Simulation of a coarse grained DNA molecule in implicit solvent. Simulation of a coarse grained DNA molecule in explicit solvent. Multiscale simulation of TBP bound to HIV promoter in implicit solvent. Simulations of closed circular DNA at coarse-grained level. SIRAH Tools: mapping, backmapping and visualization of coarse-grained models Bioinformatics, 2016 Link to Article Exploring LacI-DN. SIRAH Force field for amino acids, solvent and nucleotides.
UNESCO auspices the SIRAH course 2015! ~ SIRAH Forcefield
http://www.sirahff.com/2015/03/unesco-auspices-sirah-course-2015.html
March 2, 2015. UNESCO auspices the SIRAH course 2015! We thank the authorities of UNESCO for supporting the OpenLab: Performing Molecular Simulations with SIRAH force field. We encourage students to participate. There are just two weeks left for application! Go to the following link for more information [ SIRAH course 2015. SIRAH Tools: mapping, backmapping and visualization of coarse-grained models Bioinformatics, 2016 Link to Article Exploring LacI-DN. SIRAH forcefield in GROMACS.
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Sirah Fest
SIRAH Forcefield
SIRAH Course, May 2015 - Application is open! SIRAH Force field for amino acids, solvent and nucleotides. A Coarse Grained Model for Atomic-Detailed DNA Simulations with Explicit Electrostatics. Mixing Atomistic and Coarse Grain Solvation Models for MD Simulations: Let WT4 Handle the Bulk. March 2, 2015. UNESCO auspices the SIRAH course 2015! We thank the authorities of UNESCO for supporting the OpenLab: Performing Molecular Simulations with SIRAH force field. February 10, 2015. January 23, 2015. Interes...
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