slimsuite.blogspot.com
SLiMSuite Short Linear Motif discovery and analysisSLiMSuite is an open source python bioinformatics package for the prediction of short linear motifs (SLiMs) and related sequence analysis.
http://slimsuite.blogspot.com/
SLiMSuite is an open source python bioinformatics package for the prediction of short linear motifs (SLiMs) and related sequence analysis.
http://slimsuite.blogspot.com/
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SLiMSuite Short Linear Motif discovery and analysis | slimsuite.blogspot.com Reviews
https://slimsuite.blogspot.com
SLiMSuite is an open source python bioinformatics package for the prediction of short linear motifs (SLiMs) and related sequence analysis.
slimsuite.blogspot.com
SLiMSuite Short Linear Motif discovery and analysis: Sequence names and species codes for GOPHER
http://www.slimsuite.blogspot.com/2015/06/sequence-names-and-species-codes-for.html
SLiMSuite Short Linear Motif discovery and analysis. Open source bioinformatics for the prediction of short linear motifs (SLiMs) and related sequence analysis. Wednesday, 17 June 2015. Sequence names and species codes for GOPHER. And any tools using orthologue alignments produced by. Gene SPCODE AccNum [Description] SEQUENCE. Is not used for anything and is purely for easy visual identification. Is the species code. Where possible, Uniprot species mnemonics. Is optional and can contain any other text.
SLiMSuite Short Linear Motif discovery and analysis: June 2014
http://www.slimsuite.blogspot.com/2014_06_01_archive.html
SLiMSuite Short Linear Motif discovery and analysis. Open source bioinformatics for the prediction of short linear motifs (SLiMs) and related sequence analysis. Monday, 23 June 2014. New SLiMSuite release now available. A new download of. As well as fixing the minor GOPHER output bug. A new Taxonomy processing module (. Has been added. Although primarily designed for use with other. Output for the main. The final change of note is that. For more information.). Other miscellaneous updates are listed below.
SLiMSuite Short Linear Motif discovery and analysis: August 2014
http://www.slimsuite.blogspot.com/2014_08_01_archive.html
SLiMSuite Short Linear Motif discovery and analysis. Open source bioinformatics for the prediction of short linear motifs (SLiMs) and related sequence analysis. Monday, 25 August 2014. SLiMSuite release 2014-08-25 now available. Is now available (svn r466). The latest release sees a major revamp of the basic chassis for SLiMSuite onto a newer underlying. Class to enable the. The following tools are now in. Will be created/read, which will list the disorder score for each position. If. Run, which can be u...
SLiMSuite Short Linear Motif discovery and analysis: May 2014
http://www.slimsuite.blogspot.com/2014_05_01_archive.html
SLiMSuite Short Linear Motif discovery and analysis. Open source bioinformatics for the prediction of short linear motifs (SLiMs) and related sequence analysis. Wednesday, 14 May 2014. Minor bug in GOPHER output with BLAST. A fix is available on request and will be part of the next release, which should be soon. Subscribe to: Posts (Atom). External Components of SLiMSuite. SLiMSuite data types and file formats. View my complete profile. Minor bug in GOPHER output with BLAST. SLiMSuite release v1.2...
SLiMSuite Short Linear Motif discovery and analysis: January 2015
http://www.slimsuite.blogspot.com/2015_01_01_archive.html
SLiMSuite Short Linear Motif discovery and analysis. Open source bioinformatics for the prediction of short linear motifs (SLiMs) and related sequence analysis. Thursday, 8 January 2015. New MAJOR.MINOR.PATCH version numbers. One of the changes in the last release. Was the introduction of three component. Version numbers in place of the old. Numbers. These are slowly being rolled out across all the modules in an effort to approach proper semantic versioning. Onwards, therefore, version number changes.
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The Organisation of Really Contrived Acronyms: Classification
http://orcacronyms.blogspot.com/p/acronym-classification-acronyms-in-orca.html
The Organisation of Really Contrived Acronyms. Acronyms in ORCA are classified in three. Bottom of the heap is the. Acronym. This acronym may still be fairly contrived but the result has no real bearing on what the acronymn stands for. ORCA itself is an example of this, at least until it is discovered that Killer Whales are prolific generators of acronyms (in which case it would become. Respectable middle ground is held by the. Acronym. This was contrived in an. 8220;Ad hoc”. The daddy of ORCA acronyms,.
The Organisation of Really Contrived Acronyms: Acronyms
http://orcacronyms.blogspot.com/p/acronyms.html
The Organisation of Really Contrived Acronyms. ADAN - prediction of protein-protein interAction of moDular domAiNs. ACHOO - Autosomal dominant Compelling Helio-Ophthalmic Outburst. ARENA - Australian Renewable ENergy Agency. ASSET - Accelerated Segment Switch in Exons to alter Targeting. BADGER - Bay Area Digital GEo-Resource. BADGER - British Aristocrats Disregard Government Expert’s Research. BADGERS - Building Analysis Datasets and Gathering Experience Returns for Security. FACE - Free-Air CO. FATE - ...
The Organisation of Really Contrived Acronyms: FUBAR - Fast Unconstrained Bayesian AppRoximation
http://orcacronyms.blogspot.com/2015/04/fubar-fast-unconstrained-bayesian.html
The Organisation of Really Contrived Acronyms. Wednesday, 15 April 2015. FUBAR - Fast Unconstrained Bayesian AppRoximation. From the authors that brought you BUSTED (Branch-site Unrestricted Statistical Test for Episodic Diversification). Oximation. (Doubly from the authors in this case, as the first author gave the tip-off.). Despite it’s intranym status, FUBAR gets an extra geek hat-tip for being a homonym of “ foo bar. 8221; (Although in looking that up, I came across the original FUBAR. BUSTED - Bran...
The Organisation of Really Contrived Acronyms: May 2014
http://orcacronyms.blogspot.com/2014_05_01_archive.html
The Organisation of Really Contrived Acronyms. Wednesday, 21 May 2014. ARENA - Australian Renewable ENergy Agency. An independent agency established by the Australian Government on 1 July 2012. We have two objectives: to improve the competitiveness of renewable energy technologies, and to increase the supply of renewable energy in Australia. Unfortunately, ARENA was one of the losers from the recent Australian budget and might not be around much longer. Wednesday, 7 May 2014. And RNA ( R. REACH - Registr...
The Organisation of Really Contrived Acronyms: September 2014
http://orcacronyms.blogspot.com/2014_09_01_archive.html
The Organisation of Really Contrived Acronyms. Monday, 22 September 2014. MAGIC - the Meta-Analyses of Glucose and Insulin-related traits Consortium. The final human genetics consortium. For now) is MAGIC. Onsortium, another co-author of the DIAGRAM consortium. This is probably the most contrived of the lot, in that it failed to use all its words but did include “Consortium”. At the same time, being part of MAGIC has a certain appeal above CHARGE. Sunday, 21 September 2014. Number three is the GIANT.
The Organisation of Really Contrived Acronyms: DOLPHIN
http://orcacronyms.blogspot.com/p/dolphin.html
The Organisation of Really Contrived Acronyms. DOLPHIN was the ORCA Newsletter. Or, if you prefer,. Ewsletter. Oh yes. The original plan was to distribute news of ORCA, including new submissions of note, via DOLPHIN. Now you can just subscribe to this blog using the link to the left. In a very real sense, ORCA is a DOLPHIN. Subscribe to: Posts (Atom). IRENE - Image, Reconstruct, Erase Noise, Etc. GARFIELD - Genome Annotation Resource FIELDs (a cat genome browser). BLAST - Basic Local Alignment Search Tool.
The Organisation of Really Contrived Acronyms: MUSIC - MUltiScale enrIchment Calling
http://orcacronyms.blogspot.com/2014/10/music-multiscale-enrichment-calling.html
The Organisation of Really Contrived Acronyms. Tuesday, 14 October 2014. MUSIC - MUltiScale enrIchment Calling. Over on the ACGT blog. Keith Bradnam has another JABBA Award. And a nice new JABBA logo):. I'm not sure what the connection between MUSIC and ChIP-Seq is but the authors seemed pretty determined. His post is actually a twofer, as it also draws attention to an equally contrived an unfathomable intranym:. Read more at Keith’s blog. Subscribe to: Post Comments (Atom). This paper popped up in my Pu...
The Organisation of Really Contrived Acronyms: December 2014
http://orcacronyms.blogspot.com/2014_12_01_archive.html
The Organisation of Really Contrived Acronyms. Saturday, 20 December 2014. SANTA - Spatial Analysis of NeTwork Associations. A festive bioinformatics acronym today: SANTA. Ssociations. The authors don't make a big deal of the acronym in the paper but it seemed contrived enough for a Christmas ORCA entry. Ref: Cornish AJ and Markowetz F (2014) SANTA: Quantifying the Functional Content of Molecular Networks. PLoS Comput Biol 10(9): e1003808. Subscribe to: Posts (Atom). This month’s Nature Audio file ...
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SLiMSuite Short Linear Motif discovery and analysis
SLiMSuite Short Linear Motif discovery and analysis. Open source bioinformatics for the prediction of short linear motifs (SLiMs) and related sequence analysis. Wednesday, 17 June 2015. Sequence names and species codes for GOPHER. And any tools using orthologue alignments produced by. Gene SPCODE AccNum [Description] SEQUENCE. Is not used for anything and is purely for easy visual identification. Is the species code. Where possible, Uniprot species mnemonics. Is optional and can contain any other text.
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Dr Richard Edwards, Senior Lecturer in Bioinformatics. Welcome to the homepage of the Edwards lab. News and updated information is available at the EdwardsLab blog. Click on the icons below for more information. 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.
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