licebase.org
Gbrowse not running ? | LiceBase
https://licebase.org/node/761161
Skip to main content. Features, basic search. Sussie Dalvin's blog. 9 March, 2015 - 14:19 Sussie Dalvin. Sussie Dalvin's blog.
licebase.org
zsla ESTs not properly vector-clipped | LiceBase
https://licebase.org/node/761160
Skip to main content. Features, basic search. Zsla ESTs not properly vector-clipped. 6 March, 2015 - 09:16 Administrator. We found a large number of perfect sequence alignments to something that looks like a vector contamination in the ESTs named internally zslaa.*.scf. I assume the sequences were not vector-clipped effectively. Take this into account when using these EST sequences or alignments against the genome. This sequence was identified by Christiane Eichner, it looks like a common vector:.
licebase.org
[UPDATE] No option to extract spliced mRNA or CDS sequence from GBrowse or Tripal | LiceBase
https://licebase.org/node/761162
Skip to main content. Features, basic search. UPDATE] No option to extract spliced mRNA or CDS sequence from GBrowse or Tripal. 13 March, 2015 - 08:54 Administrator. It was noticed that it is not an easy task to extract the spliced mRNA sequence or CDS sequence directly from either GBrowse or Tripal. The annotated sequence of a Gene in Tripal will show the whole gene sequence, as well as the GBrowse CDS track: The CDS track details does not show only the coding sequence but the whole genomic sequence.
licebase.org
Update: It is working again / Scheduled Downtime 4.-5. May | LiceBase
https://licebase.org/node/761191
Skip to main content. Features, basic search. Update: It is working again / Scheduled Downtime 4.-5. May. 28 April, 2015 - 10:41 Administrator. Update: the downtime is over LiceBase is working. Even if the web-site is available in this period, we advise not to upload data or annotate experiments until we have announced that everything is cleared again. We appologize for any inconvenience caused.
licebase.org
How do I get hold of mRNA and gDNA sequence in Licebase? | LiceBase
https://licebase.org/node/761181
Skip to main content. Features, basic search. Heidi Kongshaug's blog. How do I get hold of mRNA and gDNA sequence in Licebase? 13 April, 2015 - 13:50 Heidi Kongshaug. I use Ensembl for downloading sequences, but it has not been working for the last week. How do I download mRNA and gDNA sequence from Licebase? I found the annotated sequence, but it is not quite what I want. Heidi Kongshaug's blog.
licebase.org
Genome Tools | LiceBase
https://licebase.org/genome_tools
Skip to main content. Features, basic search. Browse the L. salmonis genome in GBrowse2. Collections of potential errata in the annotation. Report a potential erratum in the genome annotation. Gene Ontology analysis of term enrichment for specific gene-sets:. All developmental stages vs. previous stage. All tissue specifc samples vs. all other tissues. Highly Useful External Links. A large database of draft genomes mostly insects but also some other arthropods. NCBI Blast at EBI. NCBI Blast at NCBI.
licebase.org
New gene finding guide | LiceBase
https://licebase.org/node/760977
Skip to main content. Features, basic search. New gene finding guide. 8 October, 2014 - 14:25 Administrator. We have a new gene finding guide. This guide is a summary of the efforts made during the course. The most common use-case is to find your genes of interest in the annotation. The documentation should serve as a reminder and guidance to the different possible steps to discover your genes in the new assembly. Please have a look at the guide at:. Https:/ licebase.org/finding genes.
licebase.org
Fixed: Multiple RNAi entry | LiceBase
https://licebase.org/node/761124
Skip to main content. Features, basic search. Heidi Kongshaug's blog. Fixed: Multiple RNAi entry. 5 February, 2015 - 08:51 Heidi Kongshaug. I tried to add D F32/F33. But I do not only get one entry but four. When I deleted one, I deleted all. I have entered D F32/F33 again, but the same happened. Heidi Kongshaug's blog.
licebase.org
RNAi | LiceBase
https://licebase.org/browse_rnai
Skip to main content. Features, basic search. Is not equal to. Does not start with. Does not end with. Length is shorter than. Length is longer than. Is not empty (NOT NULL). Select one or many phenotypes. Gene or target symbol. Is not equal to. Does not start with. Does not end with. Length is shorter than. Length is longer than. Is not empty (NOT NULL). Is not equal to. Does not start with. Does not end with. Length is shorter than. Length is longer than. Is not empty (NOT NULL). Is not equal to. 29 Ap...
licebase.org
Important: Please annotate phenotype CV | LiceBase
https://licebase.org/node/761110
Skip to main content. Features, basic search. Important: Please annotate phenotype CV. 4 February, 2015 - 11:36 Administrator. This is an important reminder for the annotation of RNAi experiments. Please annotate the phenotype correctly after finishing the experiment. To fully annotate the phenotyp, please use the Phenotype CV. Field on the first page of the annotation, even if you have given a textual annotation of the phenotype. Please use No visible phenotype.
