solubis.switchlab.org
Menu | SolubiS 1.0Submit a new SolubiS job. 2015 VIB Switch Laboratory.
http://solubis.switchlab.org/
Submit a new SolubiS job. 2015 VIB Switch Laboratory.
http://solubis.switchlab.org/
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Menu | SolubiS 1.0 | solubis.switchlab.org Reviews
https://solubis.switchlab.org
Submit a new SolubiS job. 2015 VIB Switch Laboratory.
solubis.switchlab.org
User account | SolubiS 1.0
http://solubis.switchlab.org/user
Enter your SolubiS 1.0 username. Enter the password that accompanies your username. 2015 VIB Switch Laboratory.
Help | SolubiS 1.0
http://solubis.switchlab.org/help
Introduction about SolubiS 1.0. 1 General site information. 11 Is registration necessary? Not at all. As an unregistered visitor you can access and use all the tools SolubiS offers. 2 Introduction about SolubiS 1.0. SOLUBIS is a protein redesign method to abrogate aggregation through disrupting aggregation-nucleating sequences with mutations that maximally reduce their intrinsic aggregation propensity whilst preserving thermodynamic stability of the functional protein. As a last step, you need to select ...
Menu | SolubiS 1.0
http://solubis.switchlab.org/menu
Submit a new SolubiS job. 2015 VIB Switch Laboratory.
SolubiS 1.0
http://solubis.switchlab.org/database
Filter on UniProt entry name. A maximum of 15 suggestions from the database will appear while you type. Filter on PDB ID. Suggestions will appear while you type. Filter on gatekeeper mutation. Increased dTANGO implies more aggregation tendency for the mutation. Decreased dTANGO implies less aggregation tendency for the mutation. Increased ddG implies reduced structure stability for the variant. Decreased ddG implies enhanced structure stability for the variant. 2015 VIB Switch Laboratory.
Create SolubiS Job | SolubiS 1.0
http://solubis.switchlab.org/node/add/solubis-job
A name for your job. Maximum of 20 characters. Please select the input format you are providing. Enter the PDB ID in this field. Upload your PDB file here. Tick this checkbox to run FoldX RepairPDB on this PDB file. You can uncheck it if the PDB file is already repaired. 2015 VIB Switch Laboratory.
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Switch Laboratory | Switch Laboratory
http://www.switchlab.org/home
Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. The significance of protein misfolding and aggregation on the development of human disease is often underestimated and its consequences poorly understood. Indeed, so far. Only a few dozen aggregation-associated diseases have been identified, mostly neurodegenerative disorders or systemic amyloidoses. Neurodegenerative diseases are associated with a cytotoxic gain-of-function phenotype facilitating the incrimination of pr...
Switch Laboratory Members | Switch Laboratory
http://www.switchlab.org/team/all
Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Rob van der Kant.
SNPeffect | Switch Laboratory
http://www.switchlab.org/bioinformatics/snpeffect
Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Http:/ snpeffect.switchlab.org. SNPeffect 4.0 is now online. Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. Reumers J, Conde L, Medina I, Maurer-Stroh S, Van Durme J, Dopazo J, Rousseau F, Schymkowitz J. Nucleic Acids Res. 2008 Jan;36(Database issue):D825-9. Nucleic Acids Res. 2012 Jan;40(1):D935-9.
PepX | Switch Laboratory
http://www.switchlab.org/bioinformatics/pepx
Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Http:/ pepx.switchlab.org. PepX: a structural database of non-redundant protein-peptide complexes. Vanhee P, Reumers J, Stricher F, Baeten L, Serrano L, Schymkowitz J, Rousseau F. Nucleic Acids Res. 2010 Jan;38(Database issue):D545-51.
Job openings | Switch Laboratory
http://www.switchlab.org/job-openings
Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. For the moment, there are no jobs available.
Switch Laboratory Group leaders | Switch Laboratory
http://www.switchlab.org/team/Group-leader
Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Switch Laboratory Group leaders.
Waltz | Switch Laboratory
http://www.switchlab.org/bioinformatics/waltz
Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Http:/ waltz.switchlab.org. Waltz is a computer algorithm for prediction of amylogenic regions in protein sequences, trained from a large set of experimentally characterised amyloid forming peptides. Exploring the sequence determinants of amyloid structure using position-specific scoring matrices. Nat Methods. 2010 Mar;7(3):237-42.
User account | Switch Laboratory
http://www.switchlab.org/user
Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Enter your Switch Laboratory username. Enter the password that accompanies your username.
Switch lab training courses | Switch Laboratory
http://www.switchlab.org/training
Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Switch lab training courses. Spetsai Summer School Tutorial. Structural bioinformatics Part 2 (Leuven 2012). Structural Bioinformatics Part 2 (Gent). Structural Bioinformatics Part 1 (Gent). Structural Bioinformatics Part 2 (Leuven). Structural Bioinformatics Part 1 (Leuven). ITC training course on protein aggregation.
Contact | Switch Laboratory
http://www.switchlab.org/gmaplocation
Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Department of Cellular and Molecular Medicine. Campus Gasthuisberg O&N 1. Herestraat 49 Box 802. Tel 32 16 37 25 70. Fax 32 16 37 25 71. E-mail: hannah.wilkinson@switch.vib-kuleuven.be. The Google Map below points exactly to our location on the KULeuven campus.
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solubio
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