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PAGE TITLE
SoyKB: Soybean Knowledge Base - Home - | soykb.org Reviews
<META>
DESCRIPTION
SoyKB: Soybean Knowledge Base
<META>
KEYWORDS
1 create an account
2 genes
3 mirna/srna
4 metabolites
5 trait
6 browse
7 gene families
8 3d protein structure
9 homeologous genes
10 phosphorylation
CONTENT
Page content here
KEYWORDS ON
PAGE
create an account,genes,mirna/srna,metabolites,trait,browse,gene families,3d protein structure,homeologous genes,phosphorylation,gsoja,genome browser,in silico,breeding program,differential expression,efp browser,tf orfeome,tools,gene pathway viewer,blast
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SoyKB: Soybean Knowledge Base - Home - | soykb.org Reviews

https://soykb.org

SoyKB: Soybean Knowledge Base

INTERNAL PAGES

soykb.org soykb.org
1

SoyKB: Soybean Knowledge Base - eFP Browser -

http://www.soykb.org/cgi-bin_new/dataCheck.php

Retrieve a Lost Password. Login/Account signup only required for access to private data. Fast Neutron Mutant Data. Affymetrix Probe ID Mapper. Heatmap and Hierarchical Clustering. Please enter GeneID to access efpBrowser. Dataset1 Tissues Seed time points. Dataset2 Tissues Bjap Inoculation time points. Dataset3 Chitotetraose Flg22 Control Treatment. Dataset4 4genotypes Control PAMP Treatment. Dataset5 Aphids infestation effect timepoints. Dataset6 Root Hair Heat Stress time points.

2

SoyKB: Soybean Knowledge Base - Public Data Files -

http://www.soykb.org/public_data.php

Retrieve a Lost Password. Login/Account signup only required for access to private data. Fast Neutron Mutant Data. Affymetrix Probe ID Mapper. Heatmap and Hierarchical Clustering. SoyKB Public Dataset 001 2013-07-08. Magellan x PI438489B GBS. Xu X, Zeng L, Tao Y, Vuong T, Wan J, Boerma R, Noe J, Li Z, Finnerty S, Pathan SM, Shannon JG, Nguyen HT. Pinpointing genes underlying the quantitative trait loci for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencing.

3

SoyKB: Soybean Knowledge Base - Genome Search -

http://www.soykb.org/genome.php

Retrieve a Lost Password. Login/Account signup only required for access to private data. Fast Neutron Mutant Data. Affymetrix Probe ID Mapper. Heatmap and Hierarchical Clustering. Search the soybean genome.

4

SoyKB: Soybean Knowledge Base - Upload Data File -

http://www.soykb.org/upload.php

Retrieve a Lost Password. Login/Account signup only required for access to private data. Fast Neutron Mutant Data. Affymetrix Probe ID Mapper. Heatmap and Hierarchical Clustering. Enter a description of yourself, contact info and any information associated with your data submission. If you do not include contact information we will not be able to contact you if there is confusion over the data. Select type of data to upload:. Select data owership group:. Select groups to share data with:.

5

SoyKB: Soybean Knowledge Base - BLAST -

http://www.soykb.org/blast.php

Retrieve a Lost Password. Login/Account signup only required for access to private data. Fast Neutron Mutant Data. Affymetrix Probe ID Mapper. Heatmap and Hierarchical Clustering. Enter Sequence (raw or fasta) :. BlastP (Protein Vs Protein Database). BlastX (Translated Query Vs Protein Database). Glyma1.pep.fa.gz. Gmax 189 protein.fa. Show max hits :. BlastN (Nucleotide Vs Nucleotide Database). TBlastX (Translated Query Vs Translated Database). TBlastN (Protein Query Vs Translated Database).

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TOTAL PAGES IN THIS WEBSITE

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LINKS TO THIS WEBSITE

cyverse.org cyverse.org

Powered by CyVerse | CyVerse

http://www.cyverse.org/powered-by-cyverse

BisQue Image Analysis Environment. About Powered by CyVerse. Third-party projects can leverage our cyberinfrastructure to provide services to their users, including:. Authentication system: Use secure single sign-on between your application and all CyVerse services. Data Store: Store, share and distribute large amounts of data. High-performance framework: Execute analyses on High Performance Computing resources. Becoming Powered by CyVerse. Using the Powered by CyVerse logo. Uses CyVerse's centralized au...

digbio.missouri.edu digbio.missouri.edu

digbio

http://digbio.missouri.edu/software.html

Tools we Developed or Co-Developed. Protein tertiary structure prediction. Prediction of both general and kinase-specific protein phosphorylation sites. Primer design for microarray. Plant protein phosphorylation database. Genome Composite Distance Phylogeny for whole-genome phylogeney inferences. Codon usage bias measurement. Protein structure domain partition. Gene expression data analysis. A comprehensive resource for Helicobactor Pylori. Partition and display gene graph based on GO terms.

staceylab.missouri.edu staceylab.missouri.edu

Links | Legume-Microbe Interactions Laboratory

http://staceylab.missouri.edu/links

National Center for Biotechnology Information. DNA Data Bank of Japan. The Institute for Genomics Research. Clemson University Genomics Institute. University of Missouri (MU). MU Center for Sustainable Energy. Soybean Knowledge Base (SoyKB). Soybean Genomics and Biotechnology Center. North Central Soybean Research Program. Missouri Soybean Merchandising Council. TIGR Soybean Gene Index. The Arabidopsis Information Resource. Arabidopsis Functional Genomics Consortium. Syngenta Arabidopsis Insertion Library.

outreach.gramene.org outreach.gramene.org

ASPB 2013 Booth - Gramene Outreach

http://outreach.gramene.org/gramene-outreach/index.php/ASPB_2013_Booth

Visit a collection of Plant Genomics databases and projects with resources for sequenced genomes, ontology development, genetic mapping, functional annotation of genes, mutants and phenotypes, genetic diversity, and bioinformatics tools. Representatives from the projects indicated below will be present to demonstrate tools for cutting-edge genomics and genetics research and to answer questions. You can find us at Booth #200. Plant Genome Resources Outreach Booth. Projects with a Representative On Site.

soybiotechcenter.org soybiotechcenter.org

NCSB | Links

http://www.soybiotechcenter.org/links.cfm

Center for Botanical Interaction Studies. College of Agriculture, Food and Natural Resources. Christopher S. Bond Life Science Center. Division of Plant Sciences. EMAC - Economics and Management of Agrobiotechnology Center. Plant Transformation Core Facility. USDA-ARS Plant Genetics Research Unit at the University of Missouri. American Soybean Associaton (ASA). Donald Danforth Plant Science Center. Missouri Seed Improvement Association. Missouri Soybean Merchandising Council / Missouri Soybean Association.

outreach.gramene.org outreach.gramene.org

ASPB 2013 Booth - Gramene Outreach

http://outreach.gramene.org/gramene-outreach/index.php/ASPB_2012_Booth

Redirected from ASPB 2012 Booth. Visit a collection of Plant Genomics databases and projects with resources for sequenced genomes, ontology development, genetic mapping, functional annotation of genes, mutants and phenotypes, genetic diversity, and bioinformatics tools. Representatives from the projects indicated below will be present to demonstrate tools for cutting-edge genomics and genetics research and to answer questions. You can find us at Booth #200. Plant Genome Resources Outreach Booth. See Gram...

outreach.gramene.org outreach.gramene.org

ASPB 2013 Booth - Gramene Outreach

http://outreach.gramene.org/gramene-outreach/index.php/Special:Random

Visit a collection of Plant Genomics databases and projects with resources for sequenced genomes, ontology development, genetic mapping, functional annotation of genes, mutants and phenotypes, genetic diversity, and bioinformatics tools. Representatives from the projects indicated below will be present to demonstrate tools for cutting-edge genomics and genetics research and to answer questions. You can find us at Booth #200. Plant Genome Resources Outreach Booth. Projects with a Representative On Site.

soybase.org soybase.org

University of Missouri leads soybean sequencing effort - SoyBase

http://www.soybase.org/Nguyen_sequencing

SoyBase and the Soybean Breeder's Toolbox. Follow us on Twitter @SoyBaseDatabase. Integrating Genetics and Molecular Biology for Soybean Researchers. University of Missouri Leads Soybean Sequencing Effort. As part of this project, the southern U.S. soybean cultivar "Lee" (PI 548656) was selected for sequencing to create a second reference genome in soybean. This will complement the first reference genome, "Williams82", that was chosen to represent the northern U.S. germplasm. List of Sequenced Cultivars.

soybeangenomics.missouri.edu soybeangenomics.missouri.edu

Links // Soybean Genetics & Genomics Laboratory // University of Missouri

http://soybeangenomics.missouri.edu/links

Division of Plant Sciences. A part of the College of Agriculture, Food and Natural Resources. Soybean Genetics and Genomics Laboratory. Henry T. Nguyen, Ph.D. Professor of Plant Sciences, and. MSMC Endowed Chair Soybean Genomics and Biotechnology. Division of Plant Sciences. Soybean Genomics Research: A Strategic Plan for 2012-2016. College of Agriculture, Food and Natural Resources. Division of Plant Sciences. National Center for Soybean Biotechnology. Interdisciplinary Plant Group (IPG).

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SoyKB: Soybean Knowledge Base - Home -

Retrieve a Lost Password. Login/Account signup only required for access to private data. Fast Neutron Mutant Data. Affymetrix Probe ID Mapper. Heatmap and Hierarchical Clustering. Towards this, we developed the Soybean Knowledge Base (SoyKB), a comprehensive all-inclusive web resource for soybean. SoyKB is designed to handle the storage and integration of the gene, genomics, EST, microarray, transcriptomics, proteomics, metabolomics, pathway and phenotype data. Iplant username update/signup for SoyKB use...

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