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srmcollider.org

SRM Collider

Hannes Röst 2012. The SRMCollider is a program that will take your input transitions and compare them to all other transitions in a given background proteome and find interferences. It will report these interferences on a per-peptide basis, allowing a researcher to identify peptides that share many transitions with the target peptide. Please enter the peptide sequences here (see Instructions. Low mass threshold for transitions. High mass threshold for transitions. Mycobacterium bovis BCG (tryptic).

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SRM Collider | srmcollider.org Reviews
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Hannes Röst 2012. The SRMCollider is a program that will take your input transitions and compare them to all other transitions in a given background proteome and find interferences. It will report these interferences on a per-peptide basis, allowing a researcher to identify peptides that share many transitions with the target peptide. Please enter the peptide sequences here (see Instructions. Low mass threshold for transitions. High mass threshold for transitions. Mycobacterium bovis BCG (tryptic).
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1 srm collider
2 version 1 4
3 collider
4 download
5 instructions
6 for help
7 ssrcalc window
8 arbitrary units
9 q1 mass window
10 q3 mass window
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srm collider,version 1 4,collider,download,instructions,for help,ssrcalc window,arbitrary units,q1 mass window,q3 mass window,genome,yeast tryptic,yeast peptideatlas tryptic,human tryptic,human peptideatlas tryptic,arabidopsis thaliana,yeast n15 tryptic
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SRM Collider | srmcollider.org Reviews

https://srmcollider.org

Hannes Röst 2012. The SRMCollider is a program that will take your input transitions and compare them to all other transitions in a given background proteome and find interferences. It will report these interferences on a per-peptide basis, allowing a researcher to identify peptides that share many transitions with the target peptide. Please enter the peptide sequences here (see Instructions. Low mass threshold for transitions. High mass threshold for transitions. Mycobacterium bovis BCG (tryptic).

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srmcollider.org srmcollider.org
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SRM Collider

http://www.srmcollider.org/srmcollider/about.html

Hannes Röst 2012. This page is about the SRM Collider. It will provide some information about the algorithm and a link to the source code. The SRM Collider can analyse all transitions of a target peptide in a given background. Retention times are not experimental but theortical and calulated using the " SSRCalc. It is also possible to calculate UIS (unique ion signatures) for peptides. This means that combinations of transitions are considered and analysed for uniqueness within a given RT window....The r...

2

SRM Collider

http://www.srmcollider.org/srmcollider/instructions.html

Hannes Röst 2012. The main content is provided in the big textarea where peptides or transitions can be posted. There are three ways to provide input to the SRMCollider:. You can provide one peptide sequence per line. The collider will then compute the precursor mass and the b and y series fragment masses and search for interferences. This may not be suited for you if you already have library fragment ion intensities. 2) MGF / SpectaST Style library. 116753227 10 y10 1. 89042602 12 y7 1. 50426700 1 y4 1.

3

SRM Collider

http://www.srmcollider.org/srmcollider/download.html

Hannes Röst 2012. You can download the SRM Collider source code at sourceforge.net. To install, you need a working MySQL server. To use the more advanced features, you also need to be able to compile code. Here, the install process for a Ubuntu 10.04 machine is described:. Contact me at roest.

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srmcollider.org srmcollider.org

SRM Collider

Hannes Röst 2012. The SRMCollider is a program that will take your input transitions and compare them to all other transitions in a given background proteome and find interferences. It will report these interferences on a per-peptide basis, allowing a researcher to identify peptides that share many transitions with the target peptide. Please enter the peptide sequences here (see Instructions. Low mass threshold for transitions. High mass threshold for transitions. Mycobacterium bovis BCG (tryptic).

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