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Small RNAs in Silico | Home

Folding tetraloops with molecular dynamics. September 26, 2016. Middot; Add Comment. Predictive folding of RNA structures with molecular dynamics is difficult because of the known inaccuracies of current force fields. However, even testing force fields is a challenge since converged simulations require huge amounts of computer time. We have developed a method based on replica exchange and metadynamics that allows to assess a force field by [.]. Comparing force fields for RNA folding. July 20, 2016.

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Small RNAs in Silico | Home | srnas.sissa.it Reviews

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Folding tetraloops with molecular dynamics. September 26, 2016. Middot; Add Comment. Predictive folding of RNA structures with molecular dynamics is difficult because of the known inaccuracies of current force fields. However, even testing force fields is a challenge since converged simulations require huge amounts of computer time. We have developed a method based on replica exchange and metadynamics that allows to assess a force field by [.]. Comparing force fields for RNA folding. July 20, 2016.

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Small RNAs in Silico | Home | srnas.sissa.it Reviews

https://srnas.sissa.it

Folding tetraloops with molecular dynamics. September 26, 2016. Middot; Add Comment. Predictive folding of RNA structures with molecular dynamics is difficult because of the known inaccuracies of current force fields. However, even testing force fields is a challenge since converged simulations require huge amounts of computer time. We have developed a method based on replica exchange and metadynamics that allows to assess a force field by [.]. Comparing force fields for RNA folding. July 20, 2016.

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Small RNAs in Silico | About

http://www.srnas.sissa.it/about

S-RNA-S) is a project funded by the European Research Council. Through a Starting Grant. No 306662) and hosted by the International School for Advanced Studies (SISSA, Italy). The activities started on October the 1st 2012 and will last for five years. The goal is to understand small RNAs using computer simulations. Ribonucleic acid ( RNA. And state-of-the-art rare-event methods, to the study of topics including riboswitch folding and dynamics, RNA-protein interaction and folding of non-coding RNAs.

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Small RNAs in Silico | Folding tetraloops with molecular dynamics

http://www.srnas.sissa.it/folding-tetraloops-with-molecular-dynamics

Comparing force fields for RNA folding. Folding tetraloops with molecular dynamics. September 26, 2016. Middot; Add Comment. Results have been published on the Journal of Physical Chemistry Letters. Tagged with →. Error 403: Your IP is being rate limited by Twitter. — @S RNA S.

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Small RNAs in Silico | Links

http://www.srnas.sissa.it/links

European Research Council (ERC). International School for Advanced Studies (SISSA). Group of Molecular and Statistical Biophysics. PhD program in Physics and Chemistry of Biological Systems. Error 403: Your IP is being rate limited by Twitter. — @S RNA S.

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Small RNAs in Silico | Patching RNA force field using distributions from the PDB

http://www.srnas.sissa.it/patching-rna-force-field-using-distributions-from-the-pdb

RNA folding in stop motion. Comparing force fields for RNA folding. Patching RNA force field using distributions from the PDB. May 9, 2016. Middot; Add Comment. Results have been published on the Journal of Chemical Theory and Computation. A preprint is available on arXiv. Tagged with →. Error 403: Your IP is being rate limited by Twitter. — @S RNA S.

5

Small RNAs in Silico | Comparing force fields for RNA folding

http://www.srnas.sissa.it/comparing-force-fields-for-rna-folding

Patching RNA force field using distributions from the PDB. Folding tetraloops with molecular dynamics. Comparing force fields for RNA folding. July 20, 2016. Middot; Add Comment. Results have been published on the Journal of Chemical Theory and Computation. Tagged with →. Error 403: Your IP is being rate limited by Twitter. — @S RNA S.

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Small RNAs in Silico | Home

Folding tetraloops with molecular dynamics. September 26, 2016. Middot; Add Comment. Predictive folding of RNA structures with molecular dynamics is difficult because of the known inaccuracies of current force fields. However, even testing force fields is a challenge since converged simulations require huge amounts of computer time. We have developed a method based on replica exchange and metadynamics that allows to assess a force field by [.]. Comparing force fields for RNA folding. July 20, 2016.

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