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University of Illinois Crop Sciences > Matt Hudson Lab > Bioinformatics&Plant Genomics > Home

We are a laboratory in the Crop Sciences department at the University of Illinois, Urbana-Champaign. We work together with other departments and centers on campus in a number of collaborative projects. See also Matthew Hudson's faculty page. What do we do? We work in computational biology, bioinformatics, high performance computing, genome sequencing and molecular biology. We develop and implement computational tools to allow us and others to analyse large datasets common in modern biology.

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University of Illinois Crop Sciences > Matt Hudson Lab > Bioinformatics&Plant Genomics > Home | stan.cropsci.uiuc.edu Reviews

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We are a laboratory in the Crop Sciences department at the University of Illinois, Urbana-Champaign. We work together with other departments and centers on campus in a number of collaborative projects. See also Matthew Hudson's faculty page. What do we do? We work in computational biology, bioinformatics, high performance computing, genome sequencing and molecular biology. We develop and implement computational tools to allow us and others to analyse large datasets common in modern biology.

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University of Illinois Crop Sciences > Matt Hudson Lab > Bioinformatics&Plant Genomics > Home | stan.cropsci.uiuc.edu Reviews

https://stan.cropsci.uiuc.edu

We are a laboratory in the Crop Sciences department at the University of Illinois, Urbana-Champaign. We work together with other departments and centers on campus in a number of collaborative projects. See also Matthew Hudson's faculty page. What do we do? We work in computational biology, bioinformatics, high performance computing, genome sequencing and molecular biology. We develop and implement computational tools to allow us and others to analyse large datasets common in modern biology.

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University of Illinois Crop Sciences > Matt Hudson Lab > Bioinformatics&Plant Genomics > Links

http://stan.cropsci.uiuc.edu/links.php

Arabidopsis Gene Regulatory Information Server. BioInformatics Institute, Singapore). NIH BioInformatics and Molecular Analysis Section). University of Dundee, Scotland). Bioinformatics and Evolutionary Genomics. University of Pune, India). Bioinformatics Research Centre, University of Glasgow. Samuel Lunenfeld Research Institute at Mount Sinai Hospital, Toronto). Stanford University, CA). Center for Bioinformatics and Computational Biology). CMS Molecular Biology Resource. Genome Institute of Singapore.

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University of Illinois Crop Sciences > Matt Hudson Lab > Bioinformatics&Plant Genomics > People

http://stan.cropsci.uiuc.edu/people/index.php

Matt Hudson, email mhudson (@uiuc.edu), tel. 217 244 8096, fax 217 333 8046. 1101 W. Peabody Dr. Kankshita Swaminathan, email kank (@uiuc.edu), tel. 217 265 6988, fax 217 333 8046. Indrajit Kumar, email ikumar2 (@uiuc.edu), tel. 217 265 6988, fax 217 333 8046. 1101 W. Peabody Dr. Christina Fliege, email cfliege2 (@uiuc.edu). 1101 W Peabody Dr. Gopal Battu, email gbattu (@illinois.edu), tel. 217 265 6988, fax 217 333 8046. 1101 W. Peabody Dr. 1101 W. Peabody Dr. 1101 W. Peabody Dr. 1101 W. Peabody Dr.

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University of Illinois Crop Sciences > Matt Hudson Lab > Bioinformatics&Plant Genomics > Publications

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For an up to date list, try this link to my Google Scholar page. K Varala, K. Swaminathan, Y. Li and M.E. Hudson (2011) Rapid genotyping of soybean cultivars using high throughput sequencing. PLoS ONE 6(9):e24811. doi:10.1371/journal.pone.0024811. Y Li, K. Swaminathan, M.E. Hudson (2011) Rapid, Organ-Specific Transcriptional Responses to Light Regulate Photomorphogenic Development in Dicot Seedlings. Plant Physiology August 2011 vol. 156 no. 4 2124-2140. PNAS May 3, 2011 vol. 108 no. 18 7472-7477. Geneti...

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University of Illinois Crop Sciences > Matt Hudson Lab > Bioinformatics&Plant Genomics > Crop Plant Biology: Research Projects

http://stan.cropsci.uiuc.edu/phytochrome.php

Crop Plant Biology: Research Projects. We have projects on several aspects of crop plant biology, including disease resistance, heterosis, biomass production, phytochrome mediated seedling development and canopy development. We also work with organisms associated with crops, such as pollinators, root-associated fungi and pathogens. Heterosis is essentially the same as "hybrid vigor", a key aspect of breeding and yield in many crops. And for phytochrome click here.

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University of Illinois Crop Sciences > Matt Hudson Lab > Bioinformatics&Plant Genomics > Downloads

http://stan.cropsci.uiuc.edu/sift/index.php

Most large data downloads). Looking for the web-based promoter element search tool? Compare against promoter element database. Download sift package from Hudson and Quail, 2003 (contains Perl scripts and a promoter database):.

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Subscribe to our News. Electrical and Computer Engineering. Electrical and Computer Engineering. Marcelo C. R. Melo. Center for Biophysics and Quantitative Biology. Electrical and Computer Engineering. Electrical and Computer Engineering. Electrical and Computer Engineering. Electrical and Computer Engineering. 215 Coordinated Science Laboratory. Ravi K. Iyer. Electrical and Computer Engineering. 255 Coordinated Science Laboratory. Director of the HPCBio, Affiliate of IGB and Carver Biotechnology Center.

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University of Illinois Crop Sciences > Matt Hudson Lab > Bioinformatics&Plant Genomics > Home

We are a laboratory in the Crop Sciences department at the University of Illinois, Urbana-Champaign. We work together with other departments and centers on campus in a number of collaborative projects. See also Matthew Hudson's faculty page. What do we do? We work in computational biology, bioinformatics, high performance computing, genome sequencing and molecular biology. We develop and implement computational tools to allow us and others to analyse large datasets common in modern biology.

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