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Job Postings | Araport
https://www.araport.org/community/jobs
Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. Postdoc positions on Plant Selective Autophagy. Posted date: July 25, 2016. Location: Gregor Mendel Institute. Postdoctoral Position - Systems Biology of Plant Immunity. Posted date: July 22, 2016. Location: University of Alabama at Birmingham, USA. Postdoctoral Position - ER stress in Arabidopsis Immunity. Posted date: July 22, 2016. Location: University of Alabama at Birmingham, USA. Postdoctoral position - Plant biology. Arapor...
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Science Apps Catalog | Araport
https://www.araport.org/apps
Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. Undefined property: stdClass: $name in. This is the current set of public apps deployed at Araport. Once you are logged in, you can preview their functions one-by-one by clicking each icon, or you can install and configure them permanently into your own private workspace. You can filter apps by name, description, tags, and author. Filter with free text or target specific fields, for example, with. 50 Years of Arabidopsis Research.
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Publications | Araport
https://www.araport.org/publications
Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. The Arabidopsis Information Portal ( https:/ www.araport.org. Hanlon, M. R., Vaughn, M., Mock, S., Dooley, R., Moreira, W., Stubbs, J., Town, C., Miller, J., Krishnakumar, V., Ferlanti, E., and Pence, E. (2015). Araport: an application platform for data discovery. Concurrency Computat.: Pract. Exper. Doi: 10.1002/cpe.3542. Have a question or comment? Send us a message at araport@jcvi.org. Or at our Contact Us. Http:/ www.arapo...
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Frequently Asked Questions | Araport
https://www.araport.org/help
Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. Undefined property: stdClass: $name in. Check out the FAQs to get started. You can also ask a question. By visiting the community page. If there's something that's keeping you from doing the work, please drop us a line at araport@jcvi.org. What datasets does Araport provide? Why would I need to create an account? Can I log in using my TAIR credential? Unfortunately not. Please create an Araport account. We have tested the portal (...
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Ask a Question to the Araport community | Araport
https://www.araport.org/community/ask
Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. Ask a Question to the Araport community. Do you have a list of most highly expressed isoforms? 3 weeks 4 hours. Araport11 TE identification, classification and counts tallying. 1 month 1 week. Gene symbol and full name for latest col-0 annotation. 1 month 1 week. How are new gene models chosen? One example here removes an exon with the functional domain, apparently because of low RNAseq mapping? 3 months 4 weeks. 4 months 3 weeks.
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Release Notes | Araport
https://www.araport.org/release-notes
Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. ThaleMine 1.9.1 Release. ThaleMine was updated to version 1.9.1 on June 21 2016. ThaleMine is available at https:/ apps.araport.org/thalemine/. JBrowse was updated on June 21 2016. JBrowse is available at https:/ apps.araport.org/jbrowse/? ThaleMine 1.9.1 includes the following updated datasets:. Homolog data from Panther DB, restricted only to orthologs from Human and Yeast and paralogs from Arabidopsis thaliana [MINE-1223].
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Genome Browsers | Araport
https://www.araport.org/genome-browsers
Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. This is a newer tool offering modern user interaction including continuous scroll and zoom and drag and drop. JBrowse is more interactive than GBrowse2 because it renders continuously using javascript inside your browser. JBrowse does not (yet) offer all the display features of GBrowse2, however. JBrowse is an open-source tool supported by the GMOD. Consortium. Araport intends to increase the number of JBrowse tracks over time.
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Science Apps Workspace | Araport
https://www.araport.org/workspace
Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. Undefined property: stdClass: $name in. You need to be logged in. To access Science Apps. The Arabidopsis Information Portal is funded by a grant from the National Science Foundation ( #DBI-1262414. And co-funded by a grant from the Biotechnology and Biological Sciences Research Council ( BB/L027151/1. Follow Araport on Twitter. Like Araport on Facebook.
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Data | Araport
https://www.araport.org/data
Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. Araport is more than a warehouse for. Data In addition to the Arabidopsis Col-0 genome annotation that we host, Araport encourages the community to integrate their own data resource and make them available though Araport Community Data APIs. We also provide an array of tools for searching, viewing, and interacting with data both that we host and that is hosted by the community. Head over to the Araport Developer Zone. Powered by t...
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ThaleMine User Guide | Araport
https://www.araport.org/thalemine/user-guide
Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. ThaleMine is an instance of InterMine. Offering quick and easy searching and browsing. Of data found in Araport. This user guide will introduce you to some basic features. Available at the top of all pages, type an identifier or keyword to see a report page. Preset search forms that allow you to query different data types. Create custom queries or modify existing templates. Search results can be filtered by Categories. You can fin...
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