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Kingsley Lab Stickleback Genome Browser

Body { font-family:helvetica; color:#404040; #font-size:105%; #line-height:1.3; margin: 4.0em; }. Welcome to the Sticklebrowser. Proceed to the Browser. What is a genome browser and how do I make it work? For basic information about how the browser works, see Karolchik et al. 2011. Or click on the Help. How do I find a particular gene or marker in the stickleback genome? How do I find the sequences in sticklebacks that are most similar to a known sequence from another organism? You can rapidly search for...

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Kingsley Lab Stickleback Genome Browser | sticklebrowser.stanford.edu Reviews
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Body { font-family:helvetica; color:#404040; #font-size:105%; #line-height:1.3; margin: 4.0em; }. Welcome to the Sticklebrowser. Proceed to the Browser. What is a genome browser and how do I make it work? For basic information about how the browser works, see Karolchik et al. 2011. Or click on the Help. How do I find a particular gene or marker in the stickleback genome? How do I find the sequences in sticklebacks that are most similar to a known sequence from another organism? You can rapidly search for...
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Kingsley Lab Stickleback Genome Browser | sticklebrowser.stanford.edu Reviews

https://sticklebrowser.stanford.edu

Body { font-family:helvetica; color:#404040; #font-size:105%; #line-height:1.3; margin: 4.0em; }. Welcome to the Sticklebrowser. Proceed to the Browser. What is a genome browser and how do I make it work? For basic information about how the browser works, see Karolchik et al. 2011. Or click on the Help. How do I find a particular gene or marker in the stickleback genome? How do I find the sequences in sticklebacks that are most similar to a known sequence from another organism? You can rapidly search for...

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1

Stickleback BLAT Search

http://sticklebrowser.stanford.edu/cgi-bin/hgBlat

Paste in a query sequence to find its location in the the genome. Multiple sequences may be searched if separated by lines starting with ' ' followed by the sequence name. Rather than pasting a sequence, you can choose to upload a text file containing the sequence. For locating PCR primers, use In-Silico PCR. For best results instead of BLAT. BLAT was written by Jim Kent. Like most of Jim's software, interactive use on this web server is free to all. Sources and executables to run batch jobs on your ...

2

UCSC Genome Browser: User Guide

http://sticklebrowser.stanford.edu/goldenPath/help/hgTracksHelp.html

Genome Browser User Guide. What does the Genome Browser do? Getting started: Genome Browser gateways. Fine-tuning the Genome Browser display. Getting started on the Table Browser. Getting started using Sessions. Getting started on Genome Graphs. Using the VisiGene Image Browser. Converting data between assemblies. Creating and Managing custom annotation tracks. Search the Genome Browser help pages:. Search the Genome mailing list archives:. See also the Open Helix tutorial and training materials. Proteom...

3

Stickleback - UCSC Genome Browser v282

http://sticklebrowser.stanford.edu/cgi-bin/hgTracks

In other Genomes (Convert). Reset all user settings. UCSC Genome Browser on Stickleback Feb. 2006 (Broad/gasAcu1) Assembly. Onclick="return imageV2.navigateButtonClick(this);" TITLE="move 10% to the right". Onclick="return imageV2.navigateButtonClick(this);" TITLE="move 47.5% to the right". Onclick="return imageV2.navigateButtonClick(this);" TITLE="move 95% to the right" zoom in. ChrIV:12,750,000-13,000,000. Onclick="return imageV2.navigateButtonClick(this);" TITLE="move start position to the right".

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Kingsley Lab Home Page

http://kingsley.stanford.edu/index.html

David M. Kingsley, Ph.D. Bone of the Week. News and Popular Summaries of. The Molecular Basis of Vertebrate Evolution. 1 Are interesting evolutionary traits controlled by countless genetic differences of small effect, or by a few genetic changes with large effects? 2 What specific genes have changed to produce interesting evolutionary differences seen in nature? 3 What kinds of mutations have occurred in these genes (e.g., dominant or recessive, coding or regulatory, preexisting or de novo)?

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Kingsley Lab Home Page - Publications

http://kingsley.stanford.edu/publications.html

David M. Kingsley, Ph.D. Bone of the Week. News and Popular Summaries of Lab's Research. Genetics of Evolutionary Change in Vertebrates. Developmental and Medical Genetics in Mice and Humans. All Papers from Newest to Oldest. Genetics of Evolutionary Change in Vertebrates:. Indjeian, VB, GA Kingman, FC Jones, CA Guenther, J Grimwood, J Schmutz, RM Myers, and DM Kingsley (2016). Evolving new skeletal traits by cis-regulatory changes in bone morphogenetic proteins. Cell 164:45-56. Arnegard, M.E., M...Mille...

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Kingsley Lab Home Page - Genetic Control of Vertebrate Evolution

http://kingsley.stanford.edu/sticklebacks.html

David M. Kingsley, Ph.D. Bone of the Week. News and Popular Summaries of Lab's Research. Genetic Control of Vertebrate Evolution. Sticklebacks offer a powerful new system for studying the molecular basis of evolutionary change in many different natural populations ( Kingsley and Peichel 2007. Jones et al. 2012. Shapiro et al. 2004. Miller et al. 2007. Albert et al. 2008. Kitano et al. 2009. Chan et al. 2010. Greenwood et al. 2011. Wark et al. 2012. Cleves et al. 2014. Miller et al. 2014. Using positional...

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Kingsley Lab Stickleback Genome Browser

Body { font-family:helvetica; color:#404040; #font-size:105%; #line-height:1.3; margin: 4.0em; }. Welcome to the Sticklebrowser. Proceed to the Browser. What is a genome browser and how do I make it work? For basic information about how the browser works, see Karolchik et al. 2011. Or click on the Help. How do I find a particular gene or marker in the stickleback genome? How do I find the sequences in sticklebacks that are most similar to a known sequence from another organism? You can rapidly search for...

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