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Publications :: stringvalidation.org
http://stringvalidation.org/modules/publications
SAM: String-based sequence search algorithm for mitochondrial DNA database queries. Forensic and phylogeographic characterization of mtDNA lineages from northern Thailand (Chiang Mai). Int J Legal Med. Consistent treatment of length variants in the human mtDNA control region: a reappraisal. Int J Legal Med. Generating population data for the EMPOP database - an overview of the mtDNA sequencing and data evaluation processes considering 273 Austrian control region sequences as example. Int J Legal Med.
Help :: stringvalidation.org
http://stringvalidation.org/modules/help
MtDNA haplotypes can be queried in two different input formats, either as differences to the rCRS or as FASTA/sequence string. Differences to the rCRS. Sequence is entered as differences to the revised Cambridge Reference Sequence (rCRS, Andrews et al 1999. Sequence is entered as consecutive string of bases (e.g. copy&paste from a text file or a consensus from sequence analysis software). Please do not enter header information like in FASTA format, enter nucleotides only. As differences to rCRS: specify ...
Haplotype :: stringvalidation.org
http://stringvalidation.org/modules/haplotype
Haplotype as differences to rCRS. Haplotype as FASTA/sequence string. Number of differences displayed. Disregard InDels in length variants at positions.
Downloads :: stringvalidation.org
http://stringvalidation.org/modules/downloads
Brandstaetter FSI2007 EMP00001.emp. 273 haplotypes from Austria in difference-coded format. Brandstaetter IJLM2004 EMP00035.emp. 100 haplotypes from Kenya in difference-coded format. Zimmermann IJLM2009 EMP00045.emp. 190 haplotypes from Thailand in difference-coded format.
Imprint :: stringvalidation.org
http://stringvalidation.org/modules/imprint
Publication corresponding 25 MedienG. Operator: Institute of Legal Medicine, Innsbruck Medical University. Place of business: Innsbruck. Offenlegung gemäß 25 MedienG. Betreiber: Institute of Legal Medicine, Innsbruck Medical University.
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Home :: stringvalidation.org
The stringvalidation test suite is accompanying the publication Roeck et al. 2010. We explicitly state that this database is not intended for any other use than testing the string-based search SAM published in Roeck et al. 2010. Especially not for forensic frequency searches. The stringvalidation test suite is a mirror of the EMPOP database ( http:/ empop.org. Brandstätter et al. 2007. Zimmermann et al. 2009. And aligned using the phylogenetic approach described in Bandelt and Parson (2008). Phylogenetic...
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