fantom2.gsc.riken.go.jp
FANTOM
http://fantom2.gsc.riken.go.jp/fantom2/doc/links.html
Computational analyses and curation. FANTOM cDNA annotation system (CAS). T Kasukawa et al. in preparation. Web-based system for human curation of sequences. T Kasukawa et al. in preparation. Displays seqencing quality (PHRED) scores. M Furuno et al. in preparation. Graphical viewer that shows homologous regions to protein sequences and start/stop condons for each frame. J Adachi et al. in preparation. RIKEN cDNA sequence clustering, viewer, and editor. RIKEN expression array database. FASTY is a program...
d2p2.pro
Disorder
http://www.d2p2.pro/about/predictors
Details on the predictors included in the database, both protein structure and disorder. Algorithm authorship is stated where necessary, as well as a contact details for all data providers. Search Instead ». This page contains brief descriptions of the predictors included in the D. If you have any specific comments or issues with a given predictors assignments a point of contact for that data provision is linked. For more general enquiries or comments please contact Matt Oates. Li,X, Romero,P. Genome Inf...
d2p2.pro
About - Database
http://www.d2p2.pro/about/database
Search Now ». Please cite the following if you make use of D. As well as papers for any original prediction methods used. Oates,M.E., Romero,P., Ishida,T., Ghalwash,M., Mizianty,M.J., Xue,B., Dosztányi,S., Uversky,V.N., Obradovic,Z., Kurgan,L., Dunker,A.K., Gough,J. (2013). "D2P2: Database of Disordered Protein Predictions.". D1):D508-D516 DOI: 10.1093/nar/gks1226. Website, and database analysis. VLXT and VSL2b predictions. Espritz and IUPred-L predictions. VLXT and VSL2b predictions.
genome3d.eu
Resource: SUPERFAMILY
http://www.genome3d.eu/resource/id/SUPERFAMILY
CATH / SCOP Mapping. Laquo; Back to all resources. The SUPERFAMILY database provides SCOP structural domain annotation of protein sequences at the superfamily and family levels using a library of HMMs. Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. Lewis TE and Sillitoe I,. Nucleic Acids Res. 2013 Jan;41(Database issue):D499-507. Prof Sir Tom L Blundell (FUGUE). Prof Cyrus Chothia (SCOP). Prof Julian Gough (SUPERFAMILY).
prosite.expasy.org
PROSITE links
http://prosite.expasy.org/prosite_link.html
Databases of protein domains and families. Pattern and profile searches. Databases of protein domains and families. Database of protein families and domains. The universal protein resource (includes UniProtKB, UniRef, UniParc). Links to related databases and portals. UniProtKB family classification and annotation. Portal to human UniProtKB/Swiss-Prot variants implied in diseases. Portal to viral UniProtKB/Swiss-Prot entries. Chordata (includes human) Protein Annotation Program. Database of protein famili...
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