PI: Wu-chun Feng, The Synergy Lab conducts basic and applied research that provides scientists and engineers with computational tools, which enable them to concentrate on their science and engineering rather than on the computer science and engineering.
http://synergy.cs.vt.edu/
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SyNeRGy Lab Home Page | synergy.cs.vt.edu Reviews
https://synergy.cs.vt.edu
PI: Wu-chun Feng, The Synergy Lab conducts basic and applied research that provides scientists and engineers with computational tools, which enable them to concentrate on their science and engineering rather than on the computer science and engineering.
synergy.cs.vt.edu
SyNeRGy Lab Home Page
http://synergy.cs.vt.edu/index.php
Lab @ Virginia Tech. Welcome to SyNeRGy Lab. Welcome to the Synergy Laboratory, short for the Systems, Networking and Renaissance Grokking Laboratory. The Synergy Lab, previously known as RADIANT. Moved to Virginia Tech from Los Alamos National Laboratory. In January 2006. The SyNeRGy Lab is now part of Department of Computer Science. At Virginia Tech in the College of Engineering. At Virginia Tech. It is affiliated with the NSF Center for High-Performance Reconfigurable Computing ( CHREC. AAlign: A SIMD...
SyNeRGy News
http://synergy.cs.vt.edu/news.php
Lab @ Virginia Tech. The following collection of news items are in reverse chronological order. Paper Accepted to ACM BCB 2016. Feng, in collaboration with Anandakrishnan, Daga, and Onufriev, have their paper Multiscale Approximation with Graphical Processing Units for Multiplicative Speedup in Molecular Dynamics. Accepted for publication in the 7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB). To be held in Seattle, Washington, USA in October, 2016. Helal, Sa...
SyNeRGy Publications
http://synergy.cs.vt.edu/publications.php
Lab @ Virginia Tech. Sort by: Publication type. First author (papers only). Jump to: Book Chapter. Download the master BibTeX file, encapsulating all publications. Temporal Data Mining for Neuroscience. Wu-Chun Feng, Yong Cao, Debprakash Patnaik, Naren Ramakrishnan. In GPU Computing Gems. February 2011. Emerald Edition. PDF) Citations: [ BibTeX. Fast Detection of Transformed Data Leaks. Xiaokui Shu, Jing Zhang, Danfeng (Daphne) Yao, Wu-chun Feng. PP (99): November 2015. PDF) Citations: [ BibTeX. Brent P&...
SyNeRGy Pictures
http://synergy.cs.vt.edu/pictures.php
Lab @ Virginia Tech. Note: Click the title to view the entire album. COE Outstanding Doctoral Student Award - Balaji Subramaniam. Synergy Lab participates in the Virginia Science Festival. Carlo del Mundo's Farewell. Heshan's Farewell, Cookout at Tom's place. Synergy Members at CS@VT Awards. Marwa Elteir's PhD Defense. NVIDIA Graduate Fellow Award. Hike at War Spur. Mountain Lake, Virginia (April 2012). At Pita Vera, Blacksburg (March 2012). Hike at Hanging Rock. Our research has been supported by:.
SyNeRGy Videos
http://synergy.cs.vt.edu/videos.php
Lab @ Virginia Tech. Accelerating Cancer Research (February 2, 2015). Virginia Tech Transforms Life Sciences Research with Big Data Solution in the Cloud (February 10, 2014). Big Compute vs Big Data: Wu Feng at TEDxVirginiaTech (December 5, 2013). An Ecosystem for the New HPC: Heterogeneous Parallel Computing at Virginia Tech (September 28, 2013). Heterogeneous Parallel Computing at Virginia Tech (February 15, 2013). Your browser does not support the video tag. Computer Science Talk at C-Tech.
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mpiBLAST | Downloads / Patches
http://www.mpiblast.org/Downloads/Patches
Downloads in this area include patches that squash bugs, preliminary features not yet in "stable", and patches required for third-party tie-ins (e.g. NCBI Toolkit, IBM Blue Gene). Users who need these files are:. Users using an older version of mpiBLAST that don't want to upgrade to the newest stable version but need a bug fix. Users wishing to use a particular version of a third-party library (e.g. want to use NCBI Toolkit October 2004). MpiBLAST-1.4.0-bgl.patch.tbz.
mpiBLAST | Downloads / Unstable
http://www.mpiblast.org/Downloads/Unstable
Downloads in this area are unstable and is not recommended for production systems. That being said, if you need a feature for your production system, it might already be implemented here. If it is not here, you have two options, (1) download the version you want the feature in, implement the feature, and let us know via the developers mailing list. About it, or (2) make a request through the developers mailing list. SVN repository: https:/ mpiblast.svn.sourceforge.net/svnroot/mpiblast/trunk.
mpiBLAST | Docs / Install
http://www.mpiblast.org/Docs/Install
Installation Guide for mpiBLAST-1.6.0. Installation for Unix/Linux/BSD/MacOS X. Note: For other versions, please see the INSTALL file shipped in the mpiBLAST package for installation instructions. Installation for Unix/Linux/ BSD/MacOS. There are four main steps to installing mpiBLAST from source. Install MPI (if not already installed). Download and extract mpiBLAST. Compile and install mpiBLAST. Configure mpiBLAST by editing the. Each of these steps are described in more detail below. If you are install...
mpiBLAST | Docs / FAQ
http://www.mpiblast.org/Docs/FAQ
Frequently Asked Questions (FAQ) for mpiBLAST. Does mpiBLAST support PSI-BLAST, PHI-BLAST, RPS-BLAST, etc? Does mpiBLAST support Mega-BLAST? Can mpiBLAST run without local storage? Can mpiBLAST run without a shared filesystem? Can mpiBLAST be run on a single processor system for testing purposes? I benchmarked mpiBLAST but I don't see super-linear speedup! Does mpiBLAST run on Mac OS X? How do I compile mpiBLAST from SVN? How do I format a huge database? How accurate are the E-value statistics? 2003 pape...
mpiBLAST | About / People
http://www.mpiblast.org/About/People
Director of the Synergy Lab. MpiBLAST is developed by the open-source community with the following people acting as the lead in the different areas. MpiBLAST-1.5, 1.6. Los Alamos National Laboratory. State University of New York, Stonybrook. University of Wisconsin, Madison. Bioinformatics Technology and Service (BITS) team of Academia Sinica Computing Centre (ASCC). Jeremy Archuleta, Virginia Tech. Pavan Balaji, Argonne National Laboratory. Carlos P. Sosa, IBM. Joseph Landman, Scalable Informatics Inc.
mpiBLAST | About / News
http://www.mpiblast.org/About/News
MpiBLAST-1.6.0 Officially Released. We are pleased to announce the availability of mpiBLAST-1.6.0 for public download. This release enables users to leverage advanced supercomputers with tens of thousands of processors to accelerate BLAST search. Get mpiBLAST-1.6.0 here. Paper Accepted to IEEE Transactions on Parallel and Distributed Systems. Detailed the design of the updated mpiBLAST 1.6.0 release. MpiBLAST-1.6.0-Beta1 Released. SC 08: mpiBLAST Scales to 32K cores on Blue Gene/P with 93% Efficiency.
mpiBLAST | About / Publications
http://www.mpiblast.org/About/Publications
Coordinating Computation and I/O in Massively Parallel Sequence Search. H Lin, X. Ma, W. Feng, N. Samatova. IEEE Transactions on Parallel and Distributed Systems. 14 pages - PDF. Massively Parallel Genomic Sequence Search on the Blue Gene/P Architecture. H Lin, P. Balaji, R. Poole, C. Sosa, X. Ma, W. Feng. The International Conference on High-Performance Computing, Networking, and Storage. 11 pages - PDF. Semantic-based Distributed I/O with the ParaMEDIC. P Balaji, W. Feng, H. Lin. 10 pages - PDF. H Lin,...
mpiBLAST | Downloads / Legacy
http://www.mpiblast.org/Downloads/Legacy
The following versions of mpiBLAST are no longer being actively developed. They are listed here for completeness and understanding of the evolution of the project. We highly recommend not. Running any of these older versions. MpiBLAST-1.5.0-PIO mpiBLAST-1.5.0-pio.tar.gz. Included a more advanced parallel I/O technique. Added explicit database caching. Codebase deprecated in favor of version 1.6.0. MpiBLAST-1.5.0 beta1 mpiBLAST-1.5.0beta1.tgz. Never officially released as production quality. Can copy data...
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SyNeRGy Lab Home Page
Lab @ Virginia Tech. Welcome to SyNeRGy Lab. Welcome to the Synergy Laboratory, short for the Systems, Networking and Renaissance Grokking Laboratory. The Synergy Lab, previously known as RADIANT. Moved to Virginia Tech from Los Alamos National Laboratory. In January 2006. The SyNeRGy Lab is now part of Department of Computer Science. At Virginia Tech in the College of Engineering. At Virginia Tech. It is affiliated with the NSF Center for High-Performance Reconfigurable Computing ( CHREC. PDF) Citations...
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SYNERGY, spol. s r.o. Was founded in 1994. We are modern, dynamic and flexible company following the purpose - to offer the professional IT services. We give a strong emphasis on the high expertise and continuing education of our employees with positive impacts on the optimal and up-to-date solutions for our customers. We offer a broad portfolio of IT services with focus on:. Projecting and realization of structured cabling systems (incl. Cat. 7 cabling systems and MMF/SMF optical networks).
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Dartmouth SYNERGY Clinical and Translational Science Institute. Fostering discovery, improving infrastructure, nurturing collaboration, enhancing training, and facilitating the translation of discovery into practice. Posted on 07 July. Career Award (K) Grant Writing 101. July 21st, 10am-12pm @DartmouthHitch. Auditorium G. http:/ bit.ly/1G57zqj. Posted on 05 June. Seminar: Biomedical Foundation Grants: Stepping Stone to NIH Research and a Rich Source for Career Development Grants http:/ bit.ly/1FyP4f9.
