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Synorth v1.0

Hg18 (Human Mar 2006). Is published in Genome Biology.

http://synorth.genereg.net/

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Synorth v1.0 | synorth.genereg.net Reviews
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Hg18 (Human Mar 2006). Is published in Genome Biology.
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Synorth v1.0 | synorth.genereg.net Reviews

https://synorth.genereg.net

Hg18 (Human Mar 2006). Is published in Genome Biology.

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synorth.genereg.net synorth.genereg.net
1

Synorth help page

http://synorth.genereg.net/site_history.html

History of the browser and the database. Remove guestbook due to too many access for that from nowhere. Add the 48 nucelear receptor genes (from Yogita) into candidate target gene list. Use cookie to save user's setting. The default storage time is 3 hours from now. Fix the bug for 1-to-2 HCNE display. Now only color those multi-copies HCNEs on different chromosome: change to use " select count(distinct(chr1). Instead of " select count(*). Change the color of 1-to-2 HCNEs into orange, the rest into gray.

2

Synorth help page

http://synorth.genereg.net/downloads.html

This list are human transcription factor genes verified by experiment (provied by Boris). ( access by request. Target genes list (unpublished data). This list is produced by Boris and David, using prediction method. ( access by request. Human (hg18) - Zebrafish (danRer5). Human (hg18) - Fugu (fr2). Human (hg18) - Tetradon (tetNig1). Human (hg18) - Medaka (oryLat1). Human (hg18) - Stickleback (gasAcu1). Human (hg18) - Zebrafish (danRer5). DanRer5 hg18 gap150k450k.hg18.bed. DanRer5 hg18 gap150k450k.txt.

3

Synorth help page

http://synorth.genereg.net/about.html

Ôrth], named in combination of " syn. Teny" and " orth. Olog", is designed for the study of evolutionary changes of genomic regulatory blocks ( GRBs. In vertebrate genomes, and especially the changes following the whole-genome duplication in teleost fish, by tracing the ortholog genes gain and loss in ancient synteny blocks. What can Synorth offer? Synorth provides three different display modes:. Locus Browser shows the GRB gene and HCNE content in reference genome coordinates;. Who maintains the site?

4

Synorth (v1.0)

http://synorth.genereg.net/cgi-bin/GRB2picture.cgi?query=chr2:1204500-2000000&showgenename=on&showcne=on&connector=on

Hg18 (Human Mar 2006). Human GRB coordinates: chr2. 1,245,257 bp. Chr2:1069186-2314443 (overlap with search: chr2:1204500-2000000). Transcription factor and target gene. Hg18 (Human Mar 2006).

5

Synorth (v1.0)

http://synorth.genereg.net/cgi-bin/GRB2picture.cgi?query=ENSG00000105997&showgenename=on&showcne=on&connector=on

Hg18 (Human Mar 2006). Human GRB coordinates: chr7. 3,307,052 bp. GRB for Ensembl gene. Transcription factor and target gene. Hg18 (Human Mar 2006).

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Synorth v1.0

Hg18 (Human Mar 2006). Is published in Genome Biology.

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