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PNNL: Systems Biology for EnteroPathogens

Systems Biology for EnteroPathogens. Recent publication (PLOS ONE, Deatherage Kaiser et al. 2013). Regarding the gut microbial community of mice and Salmonella infection highlighted in the Scientific American. Groundbreaking study (PNAS, Ansong et al. 2013). Demonstrating a functional switch in Salmonella that had previously been unrecognized has been highlighted by PNNL. We demonstrated a method for modeling that improves the predictive power of metabolic models. Program, a multi- institution. Species i...

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PNNL: Systems Biology for EnteroPathogens | sysbep.org Reviews

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Systems Biology for EnteroPathogens. Recent publication (PLOS ONE, Deatherage Kaiser et al. 2013). Regarding the gut microbial community of mice and Salmonella infection highlighted in the Scientific American. Groundbreaking study (PNAS, Ansong et al. 2013). Demonstrating a functional switch in Salmonella that had previously been unrecognized has been highlighted by PNNL. We demonstrated a method for modeling that improves the predictive power of metabolic models. Program, a multi- institution. Species i...

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1 recent news

2 in nature communications

3 center introduction

4 and yersinia

5 systems biology

6 contacts

7 about us

8 annual meeting

9 resources

10 news

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PNNL: Systems Biology for EnteroPathogens | sysbep.org Reviews

https://sysbep.org

Systems Biology for EnteroPathogens. Recent publication (PLOS ONE, Deatherage Kaiser et al. 2013). Regarding the gut microbial community of mice and Salmonella infection highlighted in the Scientific American. Groundbreaking study (PNAS, Ansong et al. 2013). Demonstrating a functional switch in Salmonella that had previously been unrecognized has been highlighted by PNNL. We demonstrated a method for modeling that improves the predictive power of metabolic models. Program, a multi- institution. Species i...

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sysbep.org

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PNNL: Systems Biology for EnteroPathogens - Data

http://www.sysbep.org/data

Program Generated Data and Resources. Note: some data sets are extremely large and complex. These resources may be better accessed through direct contact with the SysBEP team. Computational/Modeling Tools and Resources. Salmonella Typhimurium genome scale metabolic reconstruction. Salmonella Typhimurium inference models. Yersinia pestis genome scale metabolic reconstruction. Macrophage Cell Genome Scale Metabolic Reconstruction. Computational methods for constraint-based modeling of metabolic networks.

2

PNNL: Systems Biology for EnteroPathogens - Participating Institutions

http://www.sysbep.org/about/institutions.stm

Locations of Participating Institutions. This program is composed of a multidisciplinary team enabled across multiple institutions. Proteomics, metabolomics, and lipidomics research is being performed at Pacific Northwest National Laboratory and Washington State University Tri-Cities, both are located in Richland, Washington. Salmonella. Research is being performed at Oregon Health and Science University located in Portland, Oregon. Yersinia. Pacific Northwest National Laboratory. Skip to Main Content.

3

PNNL: Systems Biology for EnteroPathogens - Program Affiliated Data and Resources

http://www.sysbep.org/data/Affiliated.stm

Program Affiliated Data and Resources. PSI-Nature Structural Biology Knowledgebase. Pathosystems Resource Integration Center. PNNL's Biological MS Data and Software Distribution Center. Pathogen Functional Genomics Resource Center. Systems Biology at Pacific Northwest National Laboratory. Systems Biology Research Group at UCSD. EMSL's mass spectrometry capabilities. NIAID's Systems Biology for Infectious Diseases Research Information. Pacific Northwest National Laboratory. Skip to Main Content.

4

Annual Systems Biology Centers Meeting

http://www.sysbep.org/annual_meeting

Welcome to the 4th Annual Systems Biology Programmatic Meeting. Hosted this year by PNNL, the 4th Annual Systems Biology Programmatic Meeting is open to principal investigators, project managers, program officers, systems biology working group members, and key project personnel involved with the four NIAID-sponsored Systems Biology centers (relevent links to the meeting are on the right hand side). PNNL - Systems Biology for EnteroPathogens. Institute for Systems Biology - Systems Influenza.

5

PNNL: Systems Biology for EnteroPathogens - About the Program

http://www.sysbep.org/news

Current and Upcoming Events. 3rd Osong Symposium on Infectious Diseases 2013. Joshua Adkins and Daniel Hyduke of the SysBEP group. International meeting themed with Prospective Approach to Infectious Threat. September 24-25, 2013. Recent Project Publications plus Data Resources. SysBEP team and programmatically related NIAID Systems Biology Centers. Check out the Publications. Or the Data and Resources. Please contact us with questions or feedback. Selected Press Releases and Highlights. Mini-COBRA Cours...

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omics.pnl.gov

Related Sites | Integrative Omics

https://omics.pnl.gov/related-sites

Pacific Northwest National Laboratory. Enabling Technologies and Hardware. Methods and Instrument Development. Biological and Environmental Research. Proteomics Research Resource for Integrative Biology. Systems Biology for Enteropathogens. See also our Sponsors Page. For a list of major funding agencies. Pacific Northwest National Laboratory.

sysbio.org

Systems Biology at PNNL:Research Highlight:Cytochrome Studies Provide Biofuel Cell Potential

http://www.sysbio.org/resources/publications/highlights/adkins.stm

Pacific Northwest National Laboratory. Skip to Main Content. US Department of Energy. News and Publications - Research Highlight. Josh Adkins to Participate in Keck Futures Initiative Conference. Congratulations to systems biologist Dr. Joshua Adkins, Pacific Northwest National Laboratory, who is one of three PNNL scientists invited to participate in the ninth annual National Academies Keck Futures Initiative. Funded by the National Institute of Allergy and Infectious Diseases and the leader of a Protein...

pathogenportal.org

Pathogen Portal

http://www.pathogenportal.org/portal/portal/PathPort/About

Pathogen Portal is a repository linking to the Bioinformatics Resource Centers (BRCs) sponsored by the National Institute of Allergy and Infectious Diseases (NIAID) and maintained by The Virginia Bioinformatics Institute. The BRCs are providing web-based resources to scientific community conducting basic and applied research on organisms considered potential agents of biowarfare or bioterrorism or causing emerging or re-emerging diseases. About the Bioinformatics Resource Centers. Stores, updates, integr...

psimr.asu.edu

PSI:Biology-Materials Repository

http://psimr.asu.edu/MRLinks.html

PSI:Biology Material Repository Links. DNASU Twitter feed @DNASUPlasmids. For ordering PSI plasmids. For Next Generation and Sanger Sequencing. Virginia G. Piper Center for Personlized Diagnostics. The research center housing the PSI:Biology-Materials Repository. PSI Structural Biology Knowledgebase. Structural, Biological, Annotation, and Experimental data. NIH/NIGMS PSI:Biology Initiative Website. University of California - San Francisco. CSMP Biological Partner - University of Kansas. Integrated Cente...

metabonews.ca

MetaboNews -- June 2014

http://www.metabonews.ca/Jun2014/MetaboNews_Jun2014.htm

Published in partnership between. TMIC and the Metabolomics Society. Issue 34 - June 2014. MxP Quality Control Plasma. Informatics and Statistics for Metabolomics (2014). Online version of this newsletter:. Http:/ www.metabonews.ca/Jun2014/MetaboNews Jun2014.htm. Welcome to the thirty-fourth issue of MetaboNews. A monthly newsletter published in partnership between The Metabolomics Innovation Centre (TMIC,. Http:/ www.metabolomicscentre.ca/. And the international Metabolomics Society (. Our subscriber li...

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PNNL: Systems Biology for EnteroPathogens

Systems Biology for EnteroPathogens. Recent publication (PLOS ONE, Deatherage Kaiser et al. 2013). Regarding the gut microbial community of mice and Salmonella infection highlighted in the Scientific American. Groundbreaking study (PNAS, Ansong et al. 2013). Demonstrating a functional switch in Salmonella that had previously been unrecognized has been highlighted by PNNL. We demonstrated a method for modeling that improves the predictive power of metabolic models. Program, a multi- institution. Species i...

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