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Techtilis

Pulling together the threads of genetic research and information technology. Thursday, January 12, 2012. Can GPUs Help with Genomic Data Deluge? The last couple of weeks have seen increased coverage. Of the potential for. To accelerate the analysis of large-scale genetic sequence data, thanks to an announcement from nVidia and BGI. There seems to be little question that alternative processor architectures such as GPU and FPGA. And BGI was also successful in applying GPU technology to this problem. But as...

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Pulling together the threads of genetic research and information technology. Thursday, January 12, 2012. Can GPUs Help with Genomic Data Deluge? The last couple of weeks have seen increased coverage. Of the potential for. To accelerate the analysis of large-scale genetic sequence data, thanks to an announcement from nVidia and BGI. There seems to be little question that alternative processor architectures such as GPU and FPGA. And BGI was also successful in applying GPU technology to this problem. But as...
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Techtilis | techtilis.blogspot.com Reviews

https://techtilis.blogspot.com

Pulling together the threads of genetic research and information technology. Thursday, January 12, 2012. Can GPUs Help with Genomic Data Deluge? The last couple of weeks have seen increased coverage. Of the potential for. To accelerate the analysis of large-scale genetic sequence data, thanks to an announcement from nVidia and BGI. There seems to be little question that alternative processor architectures such as GPU and FPGA. And BGI was also successful in applying GPU technology to this problem. But as...

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Techtilis: How Deep Is It? Next-Gen Sequencing Advances and the Data Deluge

http://techtilis.blogspot.com/2011/02/how-deep-is-it-next-gen-sequencing.html

Pulling together the threads of genetic research and information technology. Thursday, February 24, 2011. How Deep Is It? Next-Gen Sequencing Advances and the Data Deluge. In the previous post. I looked at the broader picture for data growth. Closer to home in the world of biological science, sequencing is the current focus of data overload, and the situation has changed from a year ago. Scott Kahn's On the Future of Genomic Data. It is much more difficult to build such a rule for downstream analysis, an...

2

Techtilis: Bio-IT World 2011: Strategic Planning for IT Intrastructure

http://techtilis.blogspot.com/2011/04/bio-it-world-2011-strategic-planning.html

Pulling together the threads of genetic research and information technology. Tuesday, April 19, 2011. Bio-IT World 2011: Strategic Planning for IT Intrastructure. Bio-IT World took place in Boston last week, and I gave an update on Jackson's efforts related to the whitepaper. In Track 1: Hardware titled " Strategic Planning for IT Infrastructure in Support of Data-Intensive Science. Subscribe to: Post Comments (Atom). Bio-IT World 2011: Strategic Planning for IT Intra. View my complete profile.

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Techtilis: June 2010

http://techtilis.blogspot.com/2010_06_01_archive.html

Pulling together the threads of genetic research and information technology. Wednesday, June 23, 2010. High Throughput Sequencing: Next-Gen Sequencing of 17 Mouse Strains at Sanger. Thomas Keane, Senior Scientific Manager of Vertebrate Resequencing Informatics at the Wellcome Trust Sanger Institute in Cambridge, UK gave a talk titled " The Mouse Genomes Project. Next-generation sequencing and variation analysis of 17 mouse strain" at the weekly Genetics Interest Group meeting at the Jackson Laboratory.

4

Techtilis: February 2011

http://techtilis.blogspot.com/2011_02_01_archive.html

Pulling together the threads of genetic research and information technology. Thursday, February 24, 2011. How Deep Is It? Next-Gen Sequencing Advances and the Data Deluge. In the previous post. I looked at the broader picture for data growth. Closer to home in the world of biological science, sequencing is the current focus of data overload, and the situation has changed from a year ago. Scott Kahn's On the Future of Genomic Data. It is much more difficult to build such a rule for downstream analysis, an...

5

Techtilis: April 2011

http://techtilis.blogspot.com/2011_04_01_archive.html

Pulling together the threads of genetic research and information technology. Tuesday, April 19, 2011. Bio-IT World 2011: Strategic Planning for IT Intrastructure. Bio-IT World took place in Boston last week, and I gave an update on Jackson's efforts related to the whitepaper. In Track 1: Hardware titled " Strategic Planning for IT Infrastructure in Support of Data-Intensive Science. Subscribe to: Posts (Atom). Bio-IT World 2011: Strategic Planning for IT Intra. View my complete profile.

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mentalburdocks.blogspot.com mentalburdocks.blogspot.com

Mental Burdocks: HHMI, Max Planck and Wellcome Trust Announce Plans for new Open Access Journal

http://mentalburdocks.blogspot.com/2011/06/hhmi-max-planck-and-wellcome-trust.html

Science and Technology That Sticks in My Head. Monday, June 27, 2011. HHMI, Max Planck and Wellcome Trust Announce Plans for new Open Access Journal. The top-tier organizations in the biomedical and life sciences have announced plans. To launch an open access. Journal in the summer of 2012. The plans are the result of a 2010 workshop at HHMI's Janelia Farm. There is hope that this kind of approach to sharing of research findings can help speed the pace of discovery. June 27, 2011 at 4:25 PM.

mentalburdocks.blogspot.com mentalburdocks.blogspot.com

Mental Burdocks: March 2011

http://mentalburdocks.blogspot.com/2011_03_01_archive.html

Science and Technology That Sticks in My Head. Wednesday, March 2, 2011. Next-Gen Sequencing in the Nic of Time. The Milwaukee-Wisconsin Journal Sentinel has an in-depth write-up. On Nic Volker, the young boy with a incredible story of disease and recovery based in next-generation sequencing. George Church. Pioneering the Harvard/MIT geneticist, briefly cited this [at that time anonymous] case in his evening keynote back at the Harvard BioMed HPC Summit. UPDATE 6/28/11 - Another similar story. Just came ...

mentalburdocks.blogspot.com mentalburdocks.blogspot.com

Mental Burdocks: Next-Gen Sequencing in the Nic of Time

http://mentalburdocks.blogspot.com/2011/03/next-gen-sequencing-in-nic-of-time.html

Science and Technology That Sticks in My Head. Wednesday, March 2, 2011. Next-Gen Sequencing in the Nic of Time. The Milwaukee-Wisconsin Journal Sentinel has an in-depth write-up. On Nic Volker, the young boy with a incredible story of disease and recovery based in next-generation sequencing. George Church. Pioneering the Harvard/MIT geneticist, briefly cited this [at that time anonymous] case in his evening keynote back at the Harvard BioMed HPC Summit. UPDATE 6/28/11 - Another similar story. Just came ...

mentalburdocks.blogspot.com mentalburdocks.blogspot.com

Mental Burdocks: April 2010

http://mentalburdocks.blogspot.com/2010_04_01_archive.html

Science and Technology That Sticks in My Head. Thursday, April 22, 2010. Matthew Trunnell on Data Management Challenges at The Broad. Matthew Trunnell, Acting Director, Advanced IT, Broad Institute gave a talk in Track 1 Infrastructure - Hardware at Bio-IT World on Adjusting to the New Scale of Research Data Management. Software that is derived from the Storage Resource Broker (SRB) from UCSD Supercomputer Center. SRB and variants have made fairly substantial penetration into large-scale data managem...

mentalburdocks.blogspot.com mentalburdocks.blogspot.com

Mental Burdocks: September 2010

http://mentalburdocks.blogspot.com/2010_09_01_archive.html

Science and Technology That Sticks in My Head. Wednesday, September 1, 2010. A friend forward a link to a very interesting study. Subscribe to: Posts (Atom). I've had a life-long interest in science and technology, and have the good fortune to work in a position that brings the two together. This space is where the items I read about that aren't directly related to work end up. Subscribe To Mental Burdocks.

mentalburdocks.blogspot.com mentalburdocks.blogspot.com

Mental Burdocks: May 2010

http://mentalburdocks.blogspot.com/2010_05_01_archive.html

Science and Technology That Sticks in My Head. Saturday, May 29, 2010. Have developed a method of applying stem cells to scaffolding infused with growth hormone to grow teeth in a little as nine weeks in an animal model. A major move forward here has been to growth the teeth in situ instead of in the laboratory, which improves their final shape. Thursday, May 27, 2010. One Mutation for Every Three Cigarettes. If you need more evidence that cigarettes are tremendously unhealthy, Genentech. To focus on the...

mentalburdocks.blogspot.com mentalburdocks.blogspot.com

Mental Burdocks: Cars That Drive Themselves Pass the 1000 Mile Mark

http://mentalburdocks.blogspot.com/2010/10/cars-that-drive-themselves-pass-1000.html

Science and Technology That Sticks in My Head. Monday, October 11, 2010. Cars That Drive Themselves Pass the 1000 Mile Mark. Not a new story per se, but interesting in that Google has been testing autonomous cars in traffic, and they've gone 1000 miles without human intervention (and 140,000 miles with only occasional intervention). The NY Times story. UPDATE: Deepak Singh has an interesting post. On this kind of speculative research. Now one for the men and women who have served us. To Dr R Brand.

mentalburdocks.blogspot.com mentalburdocks.blogspot.com

Mental Burdocks: August 2011

http://mentalburdocks.blogspot.com/2011_08_01_archive.html

Science and Technology That Sticks in My Head. Tuesday, August 30, 2011. In what might be the the quintessential post for a blog titled Mental Burdocks, I wanted to point out a recent microbiome. Study that suggests there is a potential for gut bacteria to have impacts on the mind and mood. Researchers found that mice fed widely available probiotic Lactobacillus bacteria showed fewer signs of stress and a greater inclination towards exploration. UPDATE 8/31: Another new study. Doesn't turn up much. UPDAT...

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Mental Burdocks: January 2011

http://mentalburdocks.blogspot.com/2011_01_01_archive.html

Science and Technology That Sticks in My Head. Tuesday, January 25, 2011. Slightly off-topic, but I'm a big fan of fixing things, and that often requires a handy tool. I carried a Swiss Army knife for many years, and then Leathermans once they came on the scene. It's remarkable how similar an 1,800 old year Roman tool. Is to those of today. The other must-have is a small waterproof LED flashlight, but that's a topic for another post. Subscribe to: Posts (Atom). Subscribe To Mental Burdocks.

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Mental Burdocks: October 2010

http://mentalburdocks.blogspot.com/2010_10_01_archive.html

Science and Technology That Sticks in My Head. Monday, October 11, 2010. 50 Ideas to Change Science: MPD. Own Mouse Phenome Database. Has made NewScientist's list of 50 Ideas to Change Science. Are now springing up. From personalised medicine to our understanding of evolution, science will be the beneficiary.". Cars That Drive Themselves Pass the 1000 Mile Mark. Suggests that autonomous vehicles have the potential to transform society as dramatically as the Internet. It would certainly fix the textin...

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Techtilis

Pulling together the threads of genetic research and information technology. Thursday, January 12, 2012. Can GPUs Help with Genomic Data Deluge? The last couple of weeks have seen increased coverage. Of the potential for. To accelerate the analysis of large-scale genetic sequence data, thanks to an announcement from nVidia and BGI. There seems to be little question that alternative processor architectures such as GPU and FPGA. And BGI was also successful in applying GPU technology to this problem. But as...

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