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Advanced Field Crop Analytics – TERRA REF

A national high-throughput phenotyping platform to revolutionize plant breeding.

http://www.terraref.org/

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Advanced Field Crop Analytics – TERRA REF | terraref.org Reviews
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A national high-throughput phenotyping platform to revolutionize plant breeding.
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Advanced Field Crop Analytics – TERRA REF | terraref.org Reviews

https://terraref.org

A national high-throughput phenotyping platform to revolutionize plant breeding.

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1

Project Overview – TERRA REF

http://terraref.org/about

TERRA-REF combines advanced sensing with novel analytical approaches to accelerate breeding. The Transportation Energy Resources from Renewable Agriculture Phenotyping Reference Platform (TERRA-REF) aims to transform plant breeding by using remote sensing to quantify plant traits such as plant architecture, carbon uptake, tissue chemistry, water use, and other features to predict the yield potential and stress resistance of 400 diverse sorghum lines. TERRA-REF has already sequenced 384 of the lines with ...

2

Sensor Standards Committee Meeting Notes – TERRA REF

http://terraref.org/blog/sensor-standards

Bull; reference data. Sensor Standards Committee Meeting Notes. By David LeBauer; ARPA-E TERRA Reference Data and Computing Team. April 01, 2016. March 31, 2016 Sensor Data Standards Committee Meeting. David LeBauer, Chris Boomsma, Larry Biehl, Ed Delp, Melba Crawford, Solmaz Hajmohammadi, Charlie Zender, Matt Colgan, Alex Thomasson. Updates on Lemnatec Field Scanner in Arizona. Sample data from wheat is available. Sorghum planting scheduled for mid-April. Review of initial data sets and products. All le...

3

Existing Data Standards and Tools – TERRA REF

http://terraref.org/articles/existing-data-standards-and-tools

Existing Data Standards and Tools. September 02, 2016. Related Software, Services, and Databases. This article summarizes existing standards, conventions, controlled vocabularies, and ontologies used for the representation of crop physiological traits, agronomic metadata, sensor output, genomics, and other inforamtion related to the TERRA-REF project. It is a first draft that will eventually be updated in the TERRA Ref documentation. International Consortium for Agricultural Systems Applications (ICASA).

4

Algorithms Standards Committee Meeting – TERRA REF

http://terraref.org/blog/algorithms-standards

Bull; reference data. Algorithms Standards Committee Meeting. By David LeBauer; ARPA-E TERRA Reference Data and Computing Team. August 04, 2016. August 2016 Algorithms Standards Committee Meeting Notes. David LeBauer, Max Burnette ( mburnet2@illinois.edu. Cheryl Porter, Barnabas Poczos. Justin McGrath, Robert Pless. Using Clowder: Developing Extractors. Development instance: https:/ terraref.ncsa.illinois.edu/clowder-dev/. Https:/ terraref.ncsa.illinois.edu/clowder/. Computing Resources at NCSA *. Then w...

5

Tutorial for developers: Adding algorithms to the phenomics pipeline – TERRA REF

http://terraref.org/articles/getting-started-with-clowder

Bull; reference data. Tutorial for developers: Adding algorithms to the phenomics pipeline. By David LeBauer; ARPA-E TERRA Reference Data and Computing Team. August 09, 2016. NCSA Research Programmer Max Burnette has recorded a tutorial for computational scientists interested in adding their algorithms to Clowder. NOTE: This is aimed at pipeline developers rather than data users. This is an embedded Microsoft Office. Presentation, powered by Office Online. This video follows the slides above.

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Advanced Field Crop Analytics – TERRA REF

Photo Credit: Pedro Andrande-Sanchez. Advanced Field Crop Analytics. The Transportation Energy Resources from Renewable Agriculture Phenotyping Reference Platform (TERRA-REF) will accelerate breeding and the commercial release of high-yield bioenergy sorghum hybrids. TERRA-REF’s integrated phenotyping system components:. Field phenotyping field scanner system. The Bellwether Foundation Phenotyping Facility is a climate controlled 70 m. Phenotyping sensors on Unmanned Aerial Vehicles. UAVs will repeatedly...

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