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Sangmi Lee Pallickara: February 2008
http://sangpall.blogspot.com/2008_02_01_archive.html
Monday, February 18, 2008. Draft of PolarGrid database table design. CREATE DATABASE PolarGrid;. Possible entry unit of dataset. Possible entry unit of dataset. DataChunk is a unit of dataset which is identified by. 3) triplet of radar information (waveform, transmit antenna, receive antenna). DataChunkID BIGINT NOT NULL AUTO INCREMENT,. FileObject represents minimum unit of dataset. In general. We assume that this object can be instrumental data or. Output visualization file, or revised data file. This ...
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Sangmi Lee Pallickara: September 2008
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Tuesday, September 9, 2008. This is my note written while I was following the installation documentation from hadoop's webpage. Http:/ hadoop.apache.org/core/docs/current/quickstart.html. I installed as a root, but I'm not sure if it is necessary. You have to have ssh, rsync, and java VM on your machine. I used,. 1)ssh OpenSSH 4.3p2, OpenSSL 0.9.8b 04. 2)rsync version 2.6.8. 3)java 1.5.0 12. Download software from a Hadoop distribution site. Http:/ hadoop.apache.org/core/releases.html. Cat /ssh/id dsa...
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Sangmi Lee Pallickara: Recent Change in TG
http://sangpall.blogspot.com/2009/02/recent-change-in-tg.html
Wednesday, February 11, 2009. Recent Change in TG. Cobalt requires (queue=) in rsl string. It was optional previously. Now if you don't put either. Standard or industrial, globus will through exception,. Also condor will through exception,. Exec format error Code 6 Subcode 8. Subscribe to: Post Comments (Atom). Store and Register your EC2 machine image. Getting started with EC2. Recent Change in TG. Submitting job to Ranger. Submit and Manage Vanilla Condor Job to Swarm. View my complete profile.
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Sangmi Lee Pallickara: November 2008
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Friday, November 21, 2008. Test #4(2mil): Nov.21.2008. Full sequence test for 2million sequences. 1) Resource setup: BigRed(150), Ornl(80), Cobalt(80). 2) Service setup: Status check interval: 60 secs. Job queue scan interval: 60 secs. Job queue size: 100. 3) Input files : 2mil.tar copied to each of cluster in the $TG CLUSTER SCRATCH directory. Referred by arguments with full path to the input files. 4) Output files: staged out to swarm host. Total number of jobs submitted: 75533. Links to this post.
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Sangmi Lee Pallickara: October 2008
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Wednesday, October 15, 2008. ABSTRACT] Scheduling Large-scale Jobs over the Loosely-Coupled HPC Clusters. Links to this post. Subscribe to: Posts (Atom). ABSTRACT] Scheduling Large-scale Jobs over the Lo. View my complete profile.
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Sangmi Lee Pallickara: August 2008
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Thursday, August 21, 2008. Teragrid access end-to-end test. Teragrid sistes end-to-end test. Gatekeeper.iu.teragrid.org:2119/jobmanager-loadleveler. Tg-steele.purdue.teragrid.org:2119/jobmanager-pbs. Dslogin.sdsc.teragrid.org:2119/jobmanager-loadleveler. Job state write error. Https:/ grid-hg.ncsa.teragrid.org:2119/jobmanager-pbs. Tg-login.ornl.teragrid.org:2119/jobmanager-pbs. Gatekeeper.lonestar.tacc.teragrid.org:2119/jobmanager-lsf. Job state read error. Links to this post. Friday, August 15, 2008.
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Sangmi Lee Pallickara: July 2008
http://sangpall.blogspot.com/2008_07_01_archive.html
Wednesday, July 2, 2008. Access to the Job Submission Service with PHP using NuSOAP. If you are new to the PHP and NuSOAP, my previous posting would be helpful too. Here is the simple example for the getStatus operation,. Pull in the NuSOAP code. Require once('./lib/nusoap.php');. Client = new soapclient("http:/ your.service.location:8080/axis2/services/JobSubmissionService? TaskId = array('clusterID' = "403", 'jobID' = "0");. TaskId = array('TaskId' = $TaskId);. GetStatus = array('taskId'= $TaskId);.
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Sangmi Lee Pallickara: Additional Teragrid resources for Bioinformatics Software(CAP3)
http://sangpall.blogspot.com/2009/03/additional-teragrid-resources-for.html
Wednesday, March 18, 2009. Additional Teragrid resources for Bioinformatics Software(CAP3). Last week, I found three additional teragrid sites working with Swarm. Please note that I have experinece some problem with ANL while I was stage out files before. And Marlon informed me that Pople doesn't support community certificate. 1) grid resource: gt2 grid-abe.ncsa.teragrid.org:2119/jobmanager-pbs. 3) Test cap3: success. 1) grid resource: gt2 gram.pople.psc.teragrid.org:2119/jobmanager-pbs.
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Sangmi Lee Pallickara: Getting started with EC2
http://sangpall.blogspot.com/2009/02/getting-started-with-ec2.html
Tuesday, February 17, 2009. Getting started with EC2. To get start with EC2, you have to create an account in EC2 site. After you successfully create your EC2 account from the amazon site, there are several steps to actually use EC2 instances. Step1) Create X.509 certificate. Login to you Amazon account and AWS access identifiers page. In the X.509 certificate section, click Create New. Also Download your Certificate and store ot into your desktop safely. Mv /Desktop/*.pem . Export EC2 HOME= /.ec2. Step ...