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Thunks 'n ThingsThings I find interesting, with a high prior on topics involving bioinformatics, haskell or general programming
http://thunking.drp.id.au/
Things I find interesting, with a high prior on topics involving bioinformatics, haskell or general programming
http://thunking.drp.id.au/
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Thunks 'n Things | thunking.drp.id.au Reviews
https://thunking.drp.id.au
Things I find interesting, with a high prior on topics involving bioinformatics, haskell or general programming
thunking.drp.id.au
Thunks 'n Things: Awesome shell feature : Process substitution
http://thunking.drp.id.au/2012/06/awesome-shell-feature-process.html
Things I find interesting, with a high prior on topics involving bioinformatics, haskell or general programming. Sunday, 24 June 2012. Awesome shell feature : Process substitution. Just last week I was discussing with colleagues at the VBC. Is useful, but what you typically want is to have the fifo created and cleaned up for you by the shell. It turns out this already exists in popular shells. How is it that I've never come across this in all my years using unix! Zcat seq.fa.gz wc. Wget -O - http:/ examp...
Thunks 'n Things: October 2013
http://thunking.drp.id.au/2013_10_01_archive.html
Things I find interesting, with a high prior on topics involving bioinformatics, haskell or general programming. Tuesday, 29 October 2013. Vennt : Venn diagrams for lists of Differential Expressed Genes. So, I wrote a web tool, Vennt. That draws Venn diagrams for gene lists. Venn diagrams for up to 4 lists are drawn, and we can dynamically adjust the thresholds for significance. And get the explicit gene list for the various overlaps. Try it out, and let me know what you think! Try a live demo. 160;In my...
Thunks 'n Things: Visualizing Cuffdiff output using Vennt
http://thunking.drp.id.au/2014/02/visualizing-cuffdiff-output-using-vennt.html
Things I find interesting, with a high prior on topics involving bioinformatics, haskell or general programming. Monday, 10 February 2014. Visualizing Cuffdiff output using Vennt. I recently added a new option to Vennt. As an example, say we have 3 experimental conditions; Wildtype, Mutant 1 and Mutant 2. Using Vennt it is simple to:. View all the significantly differentially expressed genes in Mutant 1 vs Wildtype. Dynamically adjust filters for significance using the p-value cut-off, or Fold-change.
Thunks 'n Things: May 2014
http://thunking.drp.id.au/2014_05_01_archive.html
Things I find interesting, with a high prior on topics involving bioinformatics, haskell or general programming. Thursday, 22 May 2014. Interactive RNA-Seq analysis using Degust (part 1). Tl;dr Dynamic MDS plots with degust are very useful - all the cool kids are using them. Try the interactive demo. In this post I will briefly outline the advantages of the dynamic and interactive MDS plot feature of degust. Trying it with your own data is easy (skip to Getting Started). On an MDS plot we are looking for...
Thunks 'n Things: Slowdown with GHC when using multiple CPUs
http://thunking.drp.id.au/2012/06/slowdown-with-ghc-when-using-multiple.html
Things I find interesting, with a high prior on topics involving bioinformatics, haskell or general programming. Monday, 25 June 2012. Slowdown with GHC when using multiple CPUs. Recently I was writing a tool to perform a simple calculation on several large fasta sequence files. When I had it working, I thought "cool, this is haskell, let's speed it up by simply running on multiple processors". Everything worked beautifully with a near linear speedup by increasing number of cores up to 4. HashAndPrint st...
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VBC | Victorian Bioinformatics Consortium
http://www.vicbioinformatics.com/staff.shtml
The Victorian Bioinformatics Consortium closed. On the 31 December 2014.
victorian-bioinformatics-consortium.github.io
Degust by David R. Powell
http://victorian-bioinformatics-consortium.github.io/degust
Take the time to digest and appreciate your Differential Gene Expression data. Download this project as a .zip file. Download this project as a tar.gz file. An interactive web tool for visualising Differential Gene Expression data. Try a live demo. Or watch a screencast. Of Degust in action. There are three alternative ways to use Degust. Briefly, these are:. Upload a CSV of counts per gene to our public server. Do your own analysis, and upload a CSV of your analysis to our public server. Use Degust as a...
VBC | Victorian Bioinformatics Consortium
http://bioinformatics.net.au/staff.shtml
The Victorian Bioinformatics Consortium closed. On the 31 December 2014.
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Thunks 'n Things
Things I find interesting, with a high prior on topics involving bioinformatics, haskell or general programming. Thursday, 22 May 2014. Interactive RNA-Seq analysis using Degust (part 1). Tl;dr Dynamic MDS plots with degust are very useful - all the cool kids are using them. Try the interactive demo. In this post I will briefly outline the advantages of the dynamic and interactive MDS plot feature of degust. Trying it with your own data is easy (skip to Getting Started). On an MDS plot we are looking for...
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The latest Nova Scotia Drama …. On April 2, 2015. Tax credits a long running issue and one that needs an entire review. Really the who tax system needs a review, but that is unlikely. Moving on to the current issue that will ruin Nova Scotia. The film. Thoughts on politics, some numbers and what not. What's on my mind. On March 11, 2015. End of 2014 and the new year. What's on my mind. On November 27, 2014. In the beginning there is an idea! What's on my mind. On October 28, 2014. In Internet of Fake.
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