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Fong Chun Chan's Blog

A blog about bioinformatics, cancer research, R, statistics and BIG data

http://tinyheero.github.io/

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Fong Chun Chan's Blog | tinyheero.github.io Reviews
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A blog about bioinformatics, cancer research, R, statistics and BIG data
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1 about me
2 resources
3 bioinformatics
4 cancer
5 posts
6 conda
7 bioconductor
8 geoquery
9 statistics
10 survival analysis
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about me,resources,bioinformatics,cancer,posts,conda,bioconductor,geoquery,statistics,survival analysis,bayes' rule,bayesian statistics,random variables,topicmodels,configure,mixture models,expectation maximization,normalmixem,function from mixtools,cairo
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Fong Chun Chan's Blog | tinyheero.github.io Reviews

https://tinyheero.github.io

A blog about bioinformatics, cancer research, R, statistics and BIG data

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tinyheero.github.io tinyheero.github.io
1

Fong Chun Chan's Blog

http://tinyheero.github.io/tags/bioconductor

Fong Chun Chan's Blog. Posts With bioconductor Tag. Using Bioconductor in a Conda Environment. Fong Chun Chan's Blog. A blog about bioinformatics, cancer research, R, statistics and BIG data.

2

Resources

http://tinyheero.github.io/resources

Fong Chun Chan's Blog. This page contains some useful resources for becoming a better bioinformatician / data scientist. The Linux Foundation: Introduction to Linux (LFS101x). This an introduction course to the operating system (OS) Linux which is the core OS of bioinformatics and generally for data science. Fong Chun Chan's Blog. A blog about bioinformatics, cancer research, R, statistics and BIG data.

3

Installing topicmodels - "fatal error: 'gsl/gsl_rng.h'"

http://tinyheero.github.io/2016/02/20/install-r-topicmodels.html

Fong Chun Chan's Blog. Installing topicmodels - "fatal error: 'gsl/gsl rng.h'". Feb 20, 2016. I recently tried to install the topicmodels R package. V02-3) on my Mac that was running OS X Yosemite (v10.10.4 - 14E46) with Xcode (v6.4 - 6E35b). My R (v3.2.2) was installed using homebrew. I ran the following command in my R console:. Only to be met with the following errors:. The topicmodels R package actually depends on the GNU scientific library (GSL). You can get this using homebrew:. This will install t...

4

Fong Chun Chan's Blog

http://tinyheero.github.io/tags/R

Fong Chun Chan's Blog. Posts With R Tag. How to Do Bayesian Inference 101. Joint, Marginal, and Conditional Probabilities. Probability Distributions and their Mass/Density Functions. Installing topicmodels - "fatal error: 'gsl/gsl rng.h'". Configuring R - "cannot compile a simple Fortran program". Fitting a Mixture Model Using the Expectation-Maximization Algorithm in R. R Markdown to Jekyll: "Protecting" Your Math Equations. Configuration failed because cairo was not found". Making Your First R Package.

5

Using Bioconductor in a Conda Environment

http://tinyheero.github.io/2016/11/12/bioconductor-conda.html

Fong Chun Chan's Blog. Using Bioconductor in a Conda Environment. Nov 12, 2016. I recently switched over to using the conda package management system. For R One of the benefits of conda is that package installation can be performed very easily with the command:. Conda install -c r r- {. Name of package }. One of the particular channels. Is bioconda which is focused on providing bioinformatics packages. From my understanding they are the ones responsible for uploading bioconductor packages. Must not be re...

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