ms-utils.org
ms-utils.org - Editing Policies
http://www.ms-utils.org/wiki/pmwiki.php/Main/EditingPolicies
To become a co-editor of this wiki, add or maintain pages, please write an e-mail to webmaster@ms-utils.org. Do not change the layout or formatting of any of the existing pages, and use the existing headings and subheadings as far as possible (or suggest better ones). The tools are listed in alphabetical order under each heading or subheading. Provide a brief (one line in a typical browser window) summary of the software tool on the Software List. And "is there a free program or script that can help me?
raughtlab.ca
The Raught Lab
http://www.raughtlab.ca/resources/software.php
The SUMmOn website is found here. Details about the Trans-Proteomic Pipeline (TPP) is avaliable at the Institute of Systems Biology.
raughtlab.ca
The Raught Lab
http://www.raughtlab.ca/resources/msresources.php
Our consensus spectral libraries are built using SpectraST, a free tool available as part of the Trans-Proteomic Pipeline (TPP). The current version contains spectra for Ubiquitin, NEDD8, SUMO-1, SUMO-2, SUMO-3, ATG8, FAT10 and ISG15. Spectra matching chain linkages listed below are also provided in. Our perfered SpectraST parameters are provided. Modified Lysines in library. K11, K48, K63.
ms-utils.org
ms-utils.org - FAQ
http://www.ms-utils.org/wiki/pmwiki.php/Main/FAQ
The hundreds of e-mails with positive feedback and helpful suggestions received so far are gratefully acknowledged. No questions have really been asked that frequently, but a number of suggestions to link to commercial software without a useful if limited free version have been denied, as it against the explicit policy of this list. Page last modified on March 13, 2013, at 04:13 AM. 9650; Top ▲.
ms-utils.org
ms-utils.org - Home Page
http://www.ms-utils.org/wiki/pmwiki.php
A local copy of PmWiki. S documentation has been installed along with the software, and is available via the documentation index. To continue setting up PmWiki. See initial setup tasks. Page describes how to create pages in PmWiki. You can practice editing in the wiki sandbox. More information about PmWiki. Is available from http:/ www.pmwiki.org. Page last modified on March 12, 2006, at 05:37 PM. 9650; Top ▲.
phosphosite.org
About PhosphoSitePlus
http://www.phosphosite.org/staticAboutPhosphosite.do
Javascript is not enabled on this browser. This site will not work properly without Javascript. This section briefly outlines fundamental information about the biological significance of protein phosphorylation and other modifications, its importance in understanding the regulation of complex biological systems (sections 1 – 5), and features of PhosphoSitePlus. Sections 6 – 18). Post-translational Modifications in Cellular Signaling. Modification Sites, their Morphology, and Biological Meaning. Include p...
phosphosite.org
About PhosphoSitePlus
http://www.phosphosite.org/staticAboutPhosphosite.do;jsessionid=2832F7FBAF4F1D73C15A70A76B7025ED
Javascript is not enabled on this browser. This site will not work properly without Javascript. This section briefly outlines fundamental information about the biological significance of protein phosphorylation and other modifications, its importance in understanding the regulation of complex biological systems (sections 1 – 5), and features of PhosphoSitePlus. Sections 6 – 18). Post-translational Modifications in Cellular Signaling. Modification Sites, their Morphology, and Biological Meaning. Include p...
spectrumviewer.org
xiSPEC | Spectrum Viewer
http://www.spectrumviewer.org/help.php
The format of peak list accepted by xiSPEC is very simple, and easily extracted from most MS formats. Each line contains an pair of numbers: the first is an m/z value and the second is intensity. The two numbers should be separated by spaces or the tab character. You can open any of the file formats in a text editor (such as SciTE. The peak list you paste into xiSPEC should look something like the above. MGF, MSM, and APL files. TITLE=Elution from: 0.14 to 0.14 period: 0 experiment: 2 cycles: 1. MzML, mz...
