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TreeFam: Home pageEMBL-EBI
http://www.treefam.org/
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http://www.treefam.org/
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European Bioinfomatics Institute
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Cam●●●dge , Cambridgeshire, CB101SD
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European Bioinfomatics Institute
Julie Mace
Wellcome ●●●●●●●●●me Campus
Cam●●●dge , Cambridgeshire, CB101SD
GB
View this contact
European Bioinfomatics Institute
Julie Mace
Wellcome ●●●●●●●●●me Campus
Cam●●●dge , Cambridgeshire, CB101SD
GB
View this contact
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TreeFam: Home page | treefam.org Reviews
https://treefam.org
EMBL-EBI
TreeFam: Home page
Or do a sequence search. This site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser. TreeFam - database of animal gene trees. Release 10, June 2014, 347 species, 71,018 families). TreeFam is a database composed of phylogenetic trees inferred from animal genomes. It provides orthology/parology predictions as well the evolutionary history of genes. You can add ...
treefam.org
TreeFam: Help
http://www.treefam.org/help
Or do a sequence search. TreeFam 9 (Nov 2012 ). For each TreeFam family we provide:. Textual background information on the TreeFam family. Reconciled gene tree of the family. An alignment of all homologous sequences in the TreeFam family. Information about sequences in the family, including e-values, Pfam domains, sequence description, and the species name. Interactive tree graphic displaying species distribution for the full alignment. The gene orthology and paralogy predictions are generated by a pipel...
TreeFam: About
http://www.treefam.org/about/cookies
Or do a sequence search. TreeFam version was produced at the Wellcome Trust Sanger Institute. And is mainly based on EnsEMBL. TreeFam is freely available under the Creative Commons Zero. CC0) licence. We comply with the data sharing guidelines. Of the Wellcome Trust Sanger Institute. TreeFam is based on the Ensembl Compara GeneTree pipeline. Join our discussion on. EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK 44 (0)1223 49 44 44.
TreeFam: About
http://www.treefam.org/about/terms-of-use
Or do a sequence search. TreeFam version was produced at the Wellcome Trust Sanger Institute. And is mainly based on EnsEMBL. TreeFam is freely available under the Creative Commons Zero. CC0) licence. We comply with the data sharing guidelines. Of the Wellcome Trust Sanger Institute. TreeFam is based on the Ensembl Compara GeneTree pipeline. Join our discussion on. EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK 44 (0)1223 49 44 44.
TreeFam: Browse TreeFam
http://www.treefam.org/browse
Or do a sequence search. Here is the species tree used in the current TreeFam release. You can download the tree in newick format here. EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK 44 (0)1223 49 44 44.
TreeFam: Tree
http://www.treefam.org/viewtree/BRCA2
TreeFam gene tree for family. How to cite this tree.
TOTAL PAGES IN THIS WEBSITE
10
jalview.org
http://www.jalview.org/community/links
Skip to main content. Jalview and JABA Slides. Jalview and JABA Slides. Jalview has been used for several years on many websites as a visualization tool for database search results or alignment algorithms, as well as being part of several training courses. The following links are to projects which are actively using new features in Jalview version 2 . If you would like to add your project to the list, send a message to the usual address. BMC Bioinformatics. [ PubMed. MAFFT is a program for the multiple a...
FlyMine: Data Categories
http://www.flymine.org/flymine/dataCategories.do
An integrated database for Drosophila. This page lists all data sources loaded along with the date the data was downloaded and related publication. NOTE: All external links open in a new window. Crosby et al - PubMed: 17099233. Orthologues and paralogues between the 12 Drosophila. Crosby et al - PubMed: 17099233. Orthologue and paralogue relationships between these organisms. Ruan et al - PubMed: 18056084. Orthologue and paralogue relationships between these organisms. Mi et al - PubMed: 23193289. Affyme...
All tools | HUGO Gene Nomenclature Committee
http://www.genenames.org/tools/all
Use * to search with a root symbol (eg ZNF*). Old gene families archive. Statistics and downloads help. We have a selection of tools within the site that utilise the data that we store within our database. Below is a list of those tools with a brief description on the purpose of the tool. The HGNC Comparison of Orthology Predictions (HCOP). Search is a tool that integrates and displays the orthology assertions predicted for a specified human gene, or set of human genes, by EnsemblCompara.
Resources
http://doxey.uwaterloo.ca/resources.html
Applied Bioinformatics Research Group. Dept of Biology, UWaterloo. Doxey Lab Google Group. Homolog detection and sequence alignment. R package), Figtree. Genome Browsing and Analysis. Genome Browser, Galaxy. Haplotype Analysis and Visualization.
DBD Database of Biological Biinformatics Database Database of biological Databases Database of Bioinformatics Database
http://www.biodbs.info/DS.html
Proceed by clicking the first alphabet of the keyword. Serine Protease home page. Http:/ biochem.wustl.edu/ protease/. S-RAMP (STEP-Results, Applications, and Modeling Phase). Http:/ center.stelab.nagoya-u.ac.jp/web1/sramp/eng/srm1.html. MiRBase: Sequences (The miRBase Targets database is a new resource of predicted miRNA targets in animals). Http:/ microrna.sanger.ac.uk/sequences/. Merops- The peptidase database. Http:/ merops.sanger.ac.uk/. Http:/ www.treefam.org/. Http:/ vega.sanger.ac.uk/. Http:/ www...
Orthology and Orthologs: Resources and Databases
http://www.ortholog.info/resources.html
A Resource for Homology, Orthology and Genomes. Welcome to Ortholog.Info. We're just getting started, but hope to make this a major hub for orthology information, please stay tuned. Read More ». Many groups have developed methods and databases to map orthologs and homologs. Some of the strongest are listed here, with some of their individual strengths and characteristics. Part of the Ensembl database, has an elaborate analysis mechanism, though the interface is difficult (access gene-specific information...
YeastMine: Data Categories
http://yeastmine.yeastgenome.org/yeastmine/dataCategories.do
Search and retrieve S. cerevisiae data with YeastMine, populated by SGD and powered by InterMine. Data Updated on: Sep-28-2016. Genome annotation for Saccharomyces cerevisiae. Homologs for Saccharomyces cerevisiae. Ortholog and paralog relationships between MOD organisms: Yeast, Human, Mouse, Rat, Fly, Worm, Mosquito and Zebrafish. Yeast Human gene functional complementation. P POD (via SGD). Human disease gene annotations. Gene Ontology and Pathways. Physical and Genetic Interactions.
HCOP: Orthology Predictions Search
http://www.genenames.org/cgi-bin/hcop
I:before {font-size: 14px; }. HUGO Gene Nomenclature Committee. Use * to search with a root symbol (eg ZNF*). Old Gene families archive. Statistics and downloads help. HCOP: Orthology Predictions Search. Search for ortholog(s) between. Select/deselect all ortholog resources. Ortholog data as a. Tab delimited text file. Ortholog data as a. Tab delimited text file. The work of the HGNC is supported by National Human Genome Research Institute (NHGRI) grant U41HG003345. And Wellcome Trust grant 099129/Z/12/Z.
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Music | Tree Fall Sounds
There’s No Local Scene Finer. A Benefit for the Students of W.E. Greiner. Wind Streaks In Syrtis Major. Dennis Gonzalez Yells At Eels. Trembling Lips and Pale Fingertips. Natural Champion/Hold on Me/Find Your Friends. Gold Beach/The Soft Effect. OK Together/Hall and Oates/Tell Her. This Will Be Our Year. Support. Foster. Inspire. Contact Tree Fall Sounds. Switch to mobile view.
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Tree Family
Doug, Carrie, Joshua, and Ashley. Tuesday, July 14, 2009. Sunday, June 7, 2009. Fun at the Park June 7 2009. Subscribe to: Posts (Atom). Norma Rose and Tim. View my complete profile.
TreeFam
Link to TreeFam Pages. TreeFam (Tree families database) is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families. TreeFam defines a gene family as a group of genes that evolved after the speciation of single-metazoan animals. It also tries to include outgroup genes like yeast ( S. cerevisiae. And plant ( A. thaliana. To reveal these distant members.
TreeFam: Home page
Or do a sequence search. This site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser. TreeFam - database of animal gene trees. Release 9, March 2013, 109 species, 15,736 families). TreeFam is a database composed of phylogenetic trees inferred from animal genomes. It provides orthology/parology predictions as well the evolutionary history of genes. You can add ...
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treefamily.com - This website is for sale! - treefamily Resources and Information.
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Tree Family
Tree Family is an education effort targeting public lands like parks and schools with projects and programs that address an array of issues to a diversity of people. Tree Family puts a particular emphasis on the value of the trees where you live. All who participate in Tree Family will learn that caring for the forest where they live is not only good for the environment and the character of a neighborhood, but also contributes to a strong notion of citizenship and strengthens personal health.
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