TREETIME.LINHI.COM

Homepage of TreeTime

TreeTime is an extensible C software package for the Bayesian sampling of phylogenetic trees from molecular data. It is freely available under the terms of the GNU General Public License (GPL). TreeTime has been developed by Lin Himmelmann. As part of his Bioinformatics PhD thesis. Bayessche Methoden zur Schätzung von Stammbäumen mit Verzweigungszeitpunkten aus molekularen Daten. At the Goethe-University Frankfurt am Main. In the group of his PhD adviser Dirk Metzler. Now at University of Munich. Are ava...

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Homepage of TreeTime | treetime.linhi.com Reviews

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TreeTime is an extensible C software package for the Bayesian sampling of phylogenetic trees from molecular data. It is freely available under the terms of the GNU General Public License (GPL). TreeTime has been developed by Lin Himmelmann. As part of his Bioinformatics PhD thesis. Bayessche Methoden zur Schätzung von Stammbäumen mit Verzweigungszeitpunkten aus molekularen Daten. At the Goethe-University Frankfurt am Main. In the group of his PhD adviser Dirk Metzler. Now at University of Munich. Are ava...

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3 download and documentation

4 treetime v1 0

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6 mac os

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Homepage of TreeTime | treetime.linhi.com Reviews

https://treetime.linhi.com

TreeTime is an extensible C software package for the Bayesian sampling of phylogenetic trees from molecular data. It is freely available under the terms of the GNU General Public License (GPL). TreeTime has been developed by Lin Himmelmann. As part of his Bioinformatics PhD thesis. Bayessche Methoden zur Schätzung von Stammbäumen mit Verzweigungszeitpunkten aus molekularen Daten. At the Goethe-University Frankfurt am Main. In the group of his PhD adviser Dirk Metzler. Now at University of Munich. Are ava...

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treetime.linhi.com

1

Analysis of TreeTime output with R-files

http://treetime.linhi.com/example_screenshots_Routput.htm

Analysis of TreeTime output with R-files. Go to the "Download and Documentation" section to download the R-Files for the processing of the TreeTime output. Download and unzip the *.r files in the same directory as the output files. Now your folder should look similar to this:. Navigate to the output directory and execute R. Make sure that the R-command getwd(). Returns the output directory containing the TreeTime output and the unzipped R-files. Otherwise use the R-command setwd("path"). And the trees of...

2

Additional programs to analyse the TreeTime output

http://treetime.linhi.com/example_screenshots_externoutput.htm

Additional programs to analyse the TreeTime output. The file "tt treesUM.tre" contains the sampled trees on a real time scale. To analyse the trees you can use any program that reads and prints trees in the newick file format. Or FigTree to browse through the trees. Or for example you can build differnet consensus trees with the program consense.exe from the Phylip-Package. 10 May 2009, Lin Himmelmann.

3

TreeTime: Short Reference

http://treetime.linhi.com/tt_reference.htm

4

TreeTime: Adaptation of the primates example from the Beast website

http://treetime.linhi.com/tt_beast_example.htm

TreeTime: Adaptation of the primates example from the Beast website.

5

Execute TreeTime

http://treetime.linhi.com/example_screenshots_general.htm

Put the primates nexus file in the same directory as the TreeTime executable. Double-Click on TreeTime to execute the program. After TreeTime has finished, you will find all output files of the TreeTime analysis in the directory. 10 May 2009, Lin Himmelmann.

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Lin Himmelmann Statistical Consulting - Software

http://www.linhi.com/software.php

To setup, apply and make inference with discrete time and discrete space Hidden Markov Models. For a quick start on the theory of Hidden Markov Models see for example this site. On Wikipedia. The HMM R-package. Is published on CRAN, so you can install the package via "Install Package(s)." from the menu item "Package" of your R-Program. On CRAN you will find the documentation ( PDF. Executables and the source code. TreeTime is published: Lin M. Himmelmann and Dirk Metzler (2009) TreeTime: an extensibl...

$math.hsr.ch$ math.hsr.ch

math.hsr.ch: Lin Himmelmann

https://www.math.hsr.ch/Lin-Himmelmann.10206.0.html

Teilbarkeitstests mit endlichen Automaten. Binäre Addition mit einer Turing Machine. Von goldenen Eiern in der Mathematik. Einige Aspekte zur Konvexität. Rechnen mit ultragrossen und ultrakleinen Zahlen. Mathematisch fit in die FHS. Lin Himmelmann studierte Diplom-Mathematik mit Nebenfach Volkswirtschaftslehre an der Universität Mannheim und parallel dazu Diplom-Informatik. Hierauf aufbauend entschied sich Lin Himmelmann für eine Promotion in angewandter statistischer Mathematik über Modelle und Meth...

linhi.com

Lin Himmelmann Statistical Consulting - Curriculum Vitae

http://www.linhi.com/curriculumvitae.php

Dr phil. nat. Dipl.-Math. Lin M. Himmelmann. CH-8702 Zuerich, Switzerland. 49 (0)30 48 49 86 64 6. Http:/ www.linhi.com. Http:/ www.cs.uni-frankfurt.de/ linhi/. Very old home :-). Scherenberg Grundschule, Dettelbach. Franconia not Bavaria ;-). Matriculation Standard, Armin Knab Gymnasium. Civilian Service, Würzburg. Diploma Mathematics with subsidiary subject National Economy at the University of Mannheim, Diploma achieved with Grade very good, Topic of the thesis: Networkexternalities ( PDF. Cooperation...

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treetime.linhi.com

Homepage of TreeTime

TreeTime is an extensible C software package for the Bayesian sampling of phylogenetic trees from molecular data. It is freely available under the terms of the GNU General Public License (GPL). TreeTime has been developed by Lin Himmelmann. As part of his Bioinformatics PhD thesis. Bayessche Methoden zur Schätzung von Stammbäumen mit Verzweigungszeitpunkten aus molekularen Daten. At the Goethe-University Frankfurt am Main. In the group of his PhD adviser Dirk Metzler. Now at University of Munich. Are ava...

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