richardcaseyhpc.com
HPC Applied to NGS |
http://richardcaseyhpc.com/hpc-applied-to-ngs
HPC Applied to NGS. On May 7, 2015. In a recent preprint by Carrier et al. They describe the application of High-Performance Computing (HPC). Methodologies to Next Generation Sequencing (NGS). Pipelines and workflows. Specifically, they show classic MPI. Parallelization techniques applied to the Inchworm module in Trinity RNA-Seq. Step in the Trinity RNA-Seq pipeline. The MPI-enabled code is naturally called MPI-Inchworm; source code is available in current Trinity repositories. Test runs on Cray XC40.
jcsantosresearch.org
jcsantos webpage
http://www.jcsantosresearch.org/Links.html
Plot Lat/Long points on map. GEOLocate (museum.tulane.edu). Ornithological Gazetteers of South America. De novo reconstruction of transcriptomes using Trinity. Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads. Structural equation modeling (SEM). Structural Equation Modeling in MPlus (Discussion Board). Division of Statistics Scientific Computation (UT-Austin). Structural Equation Modeling in R ('lavaan' package). Structural Equation Modeling in R ('sem' package).
biomocca.blogspot.com
Monica H. Solbakken: februar 2015
http://biomocca.blogspot.com/2015_02_01_archive.html
Monica H. Solbakken. En hverdag hvor jeg balanserer mellom doktogradsstudiet og familien. Et rom hvor jeg kan sortere tanker og fortelle om små og store ting. Fredag 27. februar 2015. Geek post :-) the reason why this post is in English. I'm not known to do things halfway, but I might go a bit overboard on this one. Already 14 pages and I haven't gottend to the normalization step yet. Oh my! This course will mainly focus on de novo. If you have any suggestions shout it out loud :-). Send dette via e-post.
biobuilds.org
BioBuilds.org » BioBuilds 2015.02
https://biobuilds.org/tools-in-biobuilds/biobuilds-2015-02
Open Source informatics tools that Just Work. Support & Contracts. February 26, 2015. BioBuilds 2015.02 is a minor (interim) update to BioBuilds 2014.11. That adds the following bioinformatics tools:. X86 64 Linux, x86 64 OS X, POWER8 (RHEL), POWER8 (Ubuntu). X86 64 Linux, x86 64 OS X, POWER8 (RHEL), POWER8 (Ubuntu). X86 64 Linux*, POWER8 (Ubuntu). X86 64 Linux, POWER8 (RHEL), POWER8 (Ubuntu). X86 64 Linux, POWER8 (RHEL), POWER8 (Ubuntu). Stay connected: Register for updates. 169; 2016 BioBuilds.org.
mylne.org
Transcriptomics Workshop at La Trobe
http://www.mylne.org/ltutranscriptomics
Friday 2nd - Saturday 3rd October 2015 ( Program. A 2-day beginners-level workshop for analysis of transcriptomes will be held at La Trobe University as a satellite to the 2015 Melbourne ComBio. Brought to you by:. A 2-day beginners-level workshop for analysis of transcriptomes will be held at La Trobe University as a satellite to the 2015 Melbourne ComBio. This workshop is designed to teach the fundamental skills to map or de novo assemble RNA-seq data and basic differential expression analysis. Applica...
