tyna.gersteinlab.org

tYNA

Network analysis tool.

http://tyna.gersteinlab.org/

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tYNA | tyna.gersteinlab.org Reviews

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tYNA | tyna.gersteinlab.org Reviews

https://tyna.gersteinlab.org

Network analysis tool.

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tyna.gersteinlab.org

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tYNA API

http://tyna.gersteinlab.org/tyna/javadoc/index.html

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tYNA - Supplementary Web Site

http://tyna.gersteinlab.org/tyna/supp.jsp

Supplementary web site for. Kevin Y. Yip, Haiyuan Yu, Philip M. Kim, Martin Schultz and Mark Gerstein,. The tYNA Platform for Comparative Interactomics: A Web Tool for Managing, Comparing and Mining Multiple Networks. Go to the tYNA. Supplementary Figures (please view the JPG files at 100% zoom level for best image quality). Networks uploaded and categorized in the tYNA database. Visualizing a network in a workspace. Controls for image export and SVG viewer tips. Containing all the supplementary figures.

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kimlab.org

Publications - Kim Laboratory Website

http://www.kimlab.org/publications

Sun MGF*, Seo MH*, Nim S, Corbi-Verge C, Kim PM. Protein Engineering by highly parallel screening of computational designed variants. 20 Jul 2016: Vol. 2, no. 7, e1600692. Jeon J, Arnold R, Singh F, Teyra J, Braun T, Kim PM. PAT: predictor for structured units and its application for the optimization of target molecules for the generation of synthetic antibodies. BMC Bioinformatics. 2016 Apr 1;17:150. doi: 10.1186/s12859-016-1001-1. [PDF]. Corbi-Verge C, Kim PM. Tarasova N, Kim PM. Na H, Laver JD,. ELASP...

abstracts.gersteinlab.org

Gerstein Lab Abstracts: March 2013

http://abstracts.gersteinlab.org/2013_03_01_archive.html

Monday, March 25, 2013. Abstract for talk i0cmg - Comp Meth Prioritizing Var Exome Seq Pgenes trueLoF nethubs- 20130319-i0cmg. Filtering out Artifacts Due to Pseudogenes. Certain genes have lots of similar pseudogenes. Which could confound variant calling. Finding True LoF Mutations. Not just stop codon finding: tricky if one takes into. Account splicing, NMD, indels, &c. Using High Network Connectivity. More connected genes in many networks have a. Greater chance of being disease causing. Patterns of va...

abstracts.gersteinlab.org

Gerstein Lab Abstracts: May 2013

http://abstracts.gersteinlab.org/2013_05_01_archive.html

Thursday, May 16, 2013. Abstract for Talk at Harvard CCSB (i0farb). My talk will be concerned with the analysis of networks and the use of. Networks as a next-generation annotation for interpreting personal. Genomes. I will initially describe current approaches to genome. Annotation in terms of one-dimensional browser tracks. Here I will discuss. Approaches for annotating pseudogenes and also. For developing predictive models for gene expression. Analysis of networks (TopNet and tYNA). Understanding tran...

abstracts.gersteinlab.org

Gerstein Lab Abstracts: December 2013

http://abstracts.gersteinlab.org/2013_12_01_archive.html

Thursday, December 5, 2013. Abstract for Talk at University of Connecticut Health Center (i0ccam). Plummeting sequencing costs have led to a great increase in the number. Of personal genomes. Interpreting the large number of variants in. Them, particularly in non-coding regions, is a central challenge for. Genomics. We investigate patterns of selection in DNA elements from. The ENCODE project using the full spectrum of sequence variants from. Very strong selection constraint, comparable to coding genes:.

abstracts.gersteinlab.org

Gerstein Lab Abstracts: November 2013

http://abstracts.gersteinlab.org/2013_11_01_archive.html

Saturday, November 30, 2013. Abstract for Talk at Keystone Big Data Symposium (i0keybdata). My talk will discuss Human Genome Analysis from a data science perspective. Plummeting sequencing costs have led to a great increase in the number. Of personal genomes. Interpreting the large number of variants in. Them, particularly in non-coding regions, is a central challenge for. One data science construct that is particularly useful for genome. Interpretation is networks. My talk will be concerned with the.

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