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U-Compare: a UIMA compliant integrated natural language processing platfrom and resources

U-Compare is an integrated text mining/natural language processing system based on the UIMA Framework. [ Contact. Lists who we are]. For any UIMA component. An integrated platform of. GUI for easy drag-and-drop workflow (UIMA CPE/component descriptor) creation. Comparison by U-Compare parallel component. Evaluation, statistics and visualizations. No installation required, click Start U-Compare button below to try U-Compare now! See step by step User Guide. The world largest repository. If asked by browser.

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U-Compare is an integrated text mining/natural language processing system based on the UIMA Framework. [ Contact. Lists who we are]. For any UIMA component. An integrated platform of. GUI for easy drag-and-drop workflow (UIMA CPE/component descriptor) creation. Comparison by U-Compare parallel component. Evaluation, statistics and visualizations. No installation required, click Start U-Compare button below to try U-Compare now! See step by step User Guide. The world largest repository. If asked by browser.
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U-Compare: a UIMA compliant integrated natural language processing platfrom and resources | u-compare.org Reviews

https://u-compare.org

U-Compare is an integrated text mining/natural language processing system based on the UIMA Framework. [ Contact. Lists who we are]. For any UIMA component. An integrated platform of. GUI for easy drag-and-drop workflow (UIMA CPE/component descriptor) creation. Comparison by U-Compare parallel component. Evaluation, statistics and visualizations. No installation required, click Start U-Compare button below to try U-Compare now! See step by step User Guide. The world largest repository. If asked by browser.

INTERNAL PAGES

u-compare.org u-compare.org
1

U-Compare: update history

http://u-compare.org/updates/index.html

Brief History of U-Compare. At the University of Colorado (headed by Prof. Larry Hunter), to collect language resouces to be compatible UIMA components while promoting the U-Compare system for the community to share the resources. The first public version of U-Compare was released in 2008. We have been further broadining the collaboration with more research groups. Please refer to Contact. Page for individual contributers. Update History of U-Compare. March 10th, 2011 Version 1.1.7.1. We have changed the...

2

U-Compare: Links to Related Sites

http://u-compare.org/link.html

Department of Computer Science, Faculty of Information Science and Technology, The University of Tokyo. Center for Computational Pharmacology. At the University of Colorado Health Science Center. National Centre for Text Mining. NaCTeM) at the University of Manchester. Research on Advanced Natural Language Processing and Text Mining, Tsujii Laboratory at the University of Tokyo. BioNLP '09 Shared Task on Event Extraction. See our Bio Event Server. Chemistry Using Text Annotations (CheTA).

3

U-Compare: how to start U-Compare

http://u-compare.org/launch.html

There are three ways to launch U-Compare, Java Web Start (recommended), UCLoader Launcher (alternative). And UCLoader (command line). All these launchers download, update (if any), startup U-Compare automatically. Using Java Web Start is slightly easier, but sometimes very slow up to your network bandwidth between the U-Compare web server. Java Web Start (recommended). Sun Java 6 update 12 or later. Java 6 for Mac OS X 10.5 Update 4. Or later. See this. To fix a bug in Mac Java). Java Web Start panel,.

4

U-Compare:UIMA準拠の統合言語処理環境と互換言語資源群

http://u-compare.org/index.ja.html

下のボタンをクリックして、開き方を尋ねられた場合は Java Web Start を選択します。 2011年7月19日 Version 1.1.13. Component: added a web service component, EventMine Metaknowledge (biological event extraction tool which annotates meta-knowledge). 2011年7月4日 Version 1.1.12. Fix: annotation viewer sometimes does not scroll to show annotation selected in annotation table, and vice versa. Add: annotation table shows values in mouse over tooltips. Add: annotation underlines have spined shapes to explicitly show their edges. Java Web Start コントロールパネ...

5

U-Compare: related publications

http://u-compare.org/publications.html

List of related papers. Please cite this paper and our URL, when you use U-Compare in your work. For example,. U-Compare, http:/ u-compare.org/, (Kano et al., 2009a). Kano, Yoshinobu, William A. Baumgartner Jr., Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter and Jun'ichi Tsujii U-Compare: share and compare text mining tools with UIMA. Bioinformatics. 25(15), pp. 1997-1998, 2009; doi: 10.1093/bioinformatics/btp289. Bioinformatics. 2010; doi: 10.1093/bioinformatics/btq464. In the Soft...

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bootstrep.eu bootstrep.eu

BOOTStrep Homepage

http://www.bootstrep.eu/news.html

BOOTStrep BioNLP 2009 Shared Task - Results (March 2009):. The FSU Jena Team participated in the BioNLP 2009 Shared Task on Event Extraction and was ranked 2nd place among 24 participants with an overall average F-score of 46.7 ( http:/ www-tsujii.is.s.u-tokyo.ac.jp/GENIA/SharedTask/results/results-master.html. BOOTStrep Final Workshop "Semantic Enrichment of the Scientific Literature 2009 (SESL 2009)". Date: 30th-31th of March 2009. Place: Wellcome Trust Conference Center, Hinxton, Cambridge, UK. Concer...

bootstrep.org bootstrep.org

BOOTStrep Homepage

http://www.bootstrep.org/news.html

BOOTStrep BioNLP 2009 Shared Task - Results (March 2009):. The FSU Jena Team participated in the BioNLP 2009 Shared Task on Event Extraction and was ranked 2nd place among 24 participants with an overall average F-score of 46.7 ( http:/ www-tsujii.is.s.u-tokyo.ac.jp/GENIA/SharedTask/results/results-master.html. BOOTStrep Final Workshop "Semantic Enrichment of the Scientific Literature 2009 (SESL 2009)". Date: 30th-31th of March 2009. Place: Wellcome Trust Conference Center, Hinxton, Cambridge, UK. Concer...

ondex.org ondex.org

Ondex - data integration and visualisation

http://www.ondex.org/projects.shtml

Documentation and sample graphs. The original Ondex project. Mining candidate genes from genetic studies of crops and animals. Ondex Networks for your Website. Accelerating Discovery by Mining and Visualising Integrated Chemogenomics Data. From data to knowledge - the Ondex System for integrating Life Sciences data sources. Watch a short video of Prof Chris Rawlings explaining the project at ISMB 2009. For 3 years starting on April 1st 2008 under the SABR Systems Biology initiative. In addition, other bi...

wg.biosciencedbc.jp wg.biosciencedbc.jp

データフォーマット [実務者連絡会]

https://wg.biosciencedbc.jp/doku.php/データフォーマット

最終更新: 2012/11/13 13:41 0900 by. CC Attribution-Share Alike 4.0 International.

www-pmr.ch.cam.ac.uk www-pmr.ch.cam.ac.uk

Projects - Murray-Rust Group

http://www-pmr.ch.cam.ac.uk/wiki/Projects

Log in with Raven. Centre for Molecular Science Informatics. Current projects are denoted with *. AMI - The Chemist’s Amanuensis, or, The Intelligent Fume Cupboard. It is available to download from http:/ research.microsoft.com/en-us/projects/chem4word/. More than 250,000 downloads so far! The joint CheTA ( Che. Between the PMR group and the National Centre for Text Mining. In Manchester is funded by JISC and involves the integation of the OSCAR. Text-mining tool into the U-Compare. Otebooks project is a...

langrid.org langrid.org

Language Grid Operation Center - List of Language Grid Users

http://langrid.org/operation/en/user_list.html

List of Language Grid Users. Here is the list of Language Grid Users who have already signed agreements with the Kyoto Operation Center. Name of User Entity:. Aizawa Laboratory, Digital Content and Media Sciences Research Division, National Institute of Informatics. 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430, Japan. User Entity's Web Site:. Http:/ research.nii.ac.jp/ akiko/index e.html. Name of User Entity:. Language Infrastructure Group, National Institute of Information and Communications Technology.

ondex.org ondex.org

Ondex - data integration and visualisation

http://www.ondex.org/sabr.shtml

Documentation and sample graphs. The original Ondex project. Mining candidate genes from genetic studies of crops and animals. Ondex Networks for your Website. Accelerating Discovery by Mining and Visualising Integrated Chemogenomics Data. From data to knowledge - the Ondex System for integrating Life Sciences data sources. Watch a short video of Prof Chris Rawlings explaining the project at ISMB 2009. For 3 years starting on April 1st 2008 under the SABR Systems Biology initiative. In addition, other bi...

ondex.org ondex.org

Ondex - data integration and visualisation

http://www.ondex.org/features.shtml

Documentation and sample graphs. Java J2SE 6.0. Oracle Berkeley DB Java Edition. Apache CXF SOAP framework. Apache Lucene text search engine. Ondex plugins and workflows. Import databases and experimental datasets. Export as an Ondex graph. Export as other formats (e.g. tab-delimited file). Import an Ondex graph or use the user interface to compose a workflow and run your data integration. Visualise the integrated data. Use available layouts, filters and annotators to analyse the data.

dobsonlab.blogspot.com dobsonlab.blogspot.com

Paul Dobson's Research: August 2010

http://dobsonlab.blogspot.com/2010_08_01_archive.html

I'm only interested in dragons. Protein ROA Band Assignments. When I was working with Ewan Blanch. On protein Raman Optical Activity. Spectroscopy, one of the key problems was the lack of a central resource describing the band assignments (the signatures in the spectra that indicate the presence of a particular substructure). I did a bit of simple work. Towards bringing this together, but never really put it into action. UPDATE: you can see currently entered assignments (albeit in an unpretty form) here.

ohnlp.org ohnlp.org

OHNLP External Links - Open Health Natural Language Processing (OHNLP) Consortium

http://ohnlp.org/index.php/OHNLP_External_Links

From Open Health Natural Language Processing (OHNLP) Consortium. The following external sites may be of interest to the OHNLP community. American Medical Informatics Association (AMIA) Natural Language Processing Workgroup whose mission is to develop, apply and promote natural language processing in biomedical science, patient care, public health and biomedical education. Integrating Data for Analysis, Anonymization and SHaring (iDASH) is the newest National Center for Biomedical Computing (NCBC), which ...

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U-Compare: a UIMA compliant integrated natural language processing platfrom and resources

U-Compare is an integrated text mining/natural language processing system based on the UIMA Framework. [ Contact. Lists who we are]. For any UIMA component. An integrated platform of. GUI for easy drag-and-drop workflow (UIMA CPE/component descriptor) creation. Comparison by U-Compare parallel component. Evaluation, statistics and visualizations. No installation required, click Start U-Compare button below to try U-Compare now! See step by step User Guide. The world largest repository. If asked by browser.

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