unite.ut.ee

microbiology.se

Scripts - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/software/scripts

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Here is a collection my smart shell and perl scripts. Feel free to download and use my solutions. All software distributed through this page is free for non-commercial use and copying. Blastgrep This utility allows you to grep for pattern matches but on query-basis in BLAST reports. So, if you would like to find all. Version 1.0.2). After download, move the files to a place wher...

hibbettlablog.wordpress.com

Sequence-based species conversations in Science | Hibbett lab news

https://hibbettlablog.wordpress.com/2016/06/02/sequence-based-species-conversations-in-science

Sequence-based species conversations in Science. The Estonian-Swedish-American mycological axis has spawned a flurry of communiqués in. From Gothenburg (Sweden), who suggested that UNITE. Makes Linnaean binomials unnecessary. Diversity of Archaeorhizomycetes including species described from cultures (red) and known only from environmental sequences (blue). From Ref. 7. Tedersoo, L. et al. 2014. Global diversity and geography of soil fungi. 348: 1483 (Technical Comment). 349: 936 (Technical Comment).

microbiology.se

Summary of 2013 - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/yearly/summary-of-2013

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. One on the BacMet database. Which actually will be noted as a 2014 paper), and I have also been a co-author on a paper paving the way for better fungal systematics, related to the UNITE database. In addition, I have also published an entry in the Encyclopedia of Metagenomics on Metaxa. At the end of the year, there were some nice funding news for our group as well! We got 11&#46...

microbiology.se

Publications - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/publications

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Hammarén R, Pal C, Östman M, Björlenius B, Flach C-F, Kristiansson E, Fick J, Tysklind M, Larsson DGJ: Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics. Science of the Total Environment,. Doi: 10.1016/j.scitotenv.2016.06.228. Hammarén R, Pal C, Bengtsson-Palme J. FARAO: The Flexible All-Round Annotation Organizer. Nilsson RH...

microbiology.se

GoBiG 2013 - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/gobig/gobig-2013

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. Thursday, January 31 (Master of Article: Kemal Sanli). Wednesday, February 27 (MoA: José Sanchez). Tuesday, March 19 (MoA: Chandan Pal). Monday, April 22 (MoA: Francesco Gatto). Thursday, May 30 (MoA: Amir Feizi). Wednesday, June 19 (Spring Special Meeting). Thursday, September 26 (MoA: Johan Bengtsson-Palme). Wednesday, October 30 (MoA: Chandan Pal). Jonathan A. Eisen.

microbiology.se

Summary of 2014 - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/yearly/summary-of-2014

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. It has been a dramatic year, primarily from a personal standpoint, involving births and deaths. The single event with the largest impact on my life was of course the birth of our daughter, who I will spend the spring of 2015 attending to. And papers on antibiotic co-resistance. 2015 is going to be an exciting year! Pal C, Bengtsson-Palme J. This paper was actually published alre...

microbiology.se

Yearly - Microbiology, Metagenomics and Bioinformatics

http://microbiology.se/yearly

Mobility of genes and microbes. Microbiology, Metagenomics and Bioinformatics. Johan Bengtsson-Palme, University of Gothenburg. These pages contains yearly summaries of my research and activities:. Published paper: Antibiotic resistance in sewage treatment plants. Published paper: Strategies for better databases. Environmental pollution with antibiotics leads to resistance. Metaxa turns five years today. Jonathan A. Eisen. At the top of the page.

brbol.org

Community | brbol.org

http://www.brbol.org/content/community-0

National Center for Biotechnology Information (NCBI). International Online Community for DNA Barcoding Professionals. European Consortium for the Barcode Of Life. Canadian Centre for DNA Barcoding. Canadian Barcode of Life Network. Biodiversity Institute of Ontario University of Guelph. Registry of Biological Repositories. The Global Biodiversity Information Facility (GBIF). UNITE - A Molecular Database for the Identification of Fungi. Papers in Fungal Barcoding. Norwegian Barcode of (NorBOL).

ecbol.org

ECBOL.org : European Consortium for the Barcode Of Life

http://www.ecbol.org/Resources/dna-barcoding-databases.html

What is ECBOL.org? What is DNA Barcoding? What are people doing? How can I get involved? Calibrating Europe's Biodiversity using DNA Barcodes. Interview Professor Pedro Crous. How do I start DNA barcoding? Workshop and Meeting Reports. Barcode of Life Data Systems (BOLD). Barcode of Life NL (NBOL). Catalogue of Life (Species 2000). Consortium for the Barcode of Life (CBOL). Canadian Barcode of Life Network (BOLNET). Canadian Centre for DNA Barcoding. Global Biodiversity Information Facility (GBIF).