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Simon's Lab Book | This is where I keep track of my science! More info at www.simonuribe.comThis is where I keep track of my science! More info at www.simonuribe.com
http://uribeconvers.wordpress.com/
This is where I keep track of my science! More info at www.simonuribe.com
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Simon's Lab Book | This is where I keep track of my science! More info at www.simonuribe.com | uribeconvers.wordpress.com Reviews
https://uribeconvers.wordpress.com
This is where I keep track of my science! More info at www.simonuribe.com
uribeconvers.wordpress.com
Analyzing Genes with Statistical Binning | Simon's Lab Book
https://uribeconvers.wordpress.com/2016/07/19/analyzing-genes-with-statistical-binning
Simon's Lab Book. This is where I keep track of my science! More info at www.simonuribe.com. Analyzing Genes with Statistical Binning. July 19, 2016. July 19, 2016. Image from Bayzid et al., 2015. So, you have your multiple independent nuclear genes from your genomic experiment maybe you did Microfluidics. Or if your gene trees are not informative enough for a summary method like ASTRAL II or MP-EST? This is where Statistical Binnig. Comes to the rescue! The only things I struggled with were 1) how to de...
May | 2014 | Simon's Lab Book
https://uribeconvers.wordpress.com/2014/05
Simon's Lab Book. This is where I keep track of my science! More info at www.simonuribe.com. Manipulating my HTS data! May 9, 2014. May 10, 2014. I just got my high-throughput sequence (HTS) data from my microfluidic PCR experiment using Fluidigm. These data are 48 different amplicons (regions) from the chloroplast genome for 576 samples of Neobartsia and other genera. This are the note I took while I was dealing with this large dataset! Manipulating Fluidigm data that I got for the chloroplast genome.
Generating Unique Locus Tags for Plastomes | Simon's Lab Book
https://uribeconvers.wordpress.com/2016/06/15/generating-unique-locus-tags-for-plastomes
Simon's Lab Book. This is where I keep track of my science! More info at www.simonuribe.com. Generating Unique Locus Tags for Plastomes. June 15, 2016. June 16, 2016. You need (should) to associate a unique identifier, know as a locus tag, to each gene when you are annotating a genome. This should be done for every feature you annotate (tRNA, rRNA, CDS, genes) with the exception of miscellaneous features (e.g., Large Single Copy [LSC]) and repeated region (e.g., Inverted Repeat [IR]). Then, I combined al...
Submitting to the NCBI Sequence Read Archive (SRA) | Simon's Lab Book
https://uribeconvers.wordpress.com/2015/05/13/submitting-to-the-ncbi-sequence-read-archive-sra
Simon's Lab Book. This is where I keep track of my science! More info at www.simonuribe.com. Submitting to the NCBI Sequence Read Archive (SRA). May 13, 2015. An Easy and Step-by-Step Guide to Submit to the NCBI Sequence Read Archive (SRA). Daren C. Card. Recently, I’ve submitted several sets of sequencing reads to NCBI’s Sequence Read Archive (SRA). 1,279 more words. Microfluidic Genomic Data Processing. Learning a new cluster – SLURM! Leave a Reply Cancel reply. Enter your comment here.
Simon's Lab Book | This is where I keep track of my science! More info at www.simonuribe.com | Page 2
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Simon's Lab Book. This is where I keep track of my science! More info at www.simonuribe.com. Microfluidic Genomic Data Processing. July 20, 2014. July 20, 2014. I got my data for the microfluidic (Fluidigm) experiment back and this time it contains allelic information! I need to process it quickly so I can start running phylogenetic analyses for Botany2014, a conference next week. For i in *.fasta; do sed -i " -e 's/read2 / g' -e 's/read1 / g' $i;done. Now I can concatenate R1 and R2 using Phyutility.
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Lab Book - Simon Uribe-Convers
http://simonuribe.com/wp/lab-book
Plant Systematics, Genomics, and Evolution. I maintain an online lab book where I post about what I’m currently working on. I mostly do this to keep track of what I’m doing and how I did it! I post all the code I use, no matter how trivial , hoping that someone else will find it and benefit from it. #OpenAccess. You can find my Online Lab Book here: http:/ uribeconvers.wordpress.com. Complete chloroplast genomes and long range PCR for High-Throughput Sequencing. Proudly powered by WordPress.
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Simon's Lab Book | This is where I keep track of my science! More info at www.simonuribe.com
Simon's Lab Book. This is where I keep track of my science! More info at www.simonuribe.com. Analyzing Genes with Statistical Binning. July 19, 2016. July 19, 2016. Image from Bayzid et al., 2015. So, you have your multiple independent nuclear genes from your genomic experiment maybe you did Microfluidics. Or if your gene trees are not informative enough for a summary method like ASTRAL II or MP-EST? This is where Statistical Binnig. Comes to the rescue! The only things I struggled with were 1) how to de...
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