usegalaxy.org

etalog.blogspot.com

etalog: Preview and preprint: CNVkit, copy number detection for targeted sequencing

http://etalog.blogspot.com/2014/11/preview-and-preprint-cnvkit-copy-number.html

More of a comment than a question. Tuesday, November 4, 2014. Preview and preprint: CNVkit, copy number detection for targeted sequencing. I've posted a preprint of the CNVkit manuscript. On bioRxiv. If you think this software or method might suit your needs, please take a look and let me know what you think of it! CNVkit is a software toolkit for detecting and visualizing germline copy number variants and somatic copy number alterations in targeted or whole-exome DNA sequencing data. ( Source code.

easeq.net

FAQ | EaSeq – Interactive ChIP-seq analysis software

http://easeq.net/faq

Free and interactive software for analysis. And visualization of ChIP-sequencing data. Hardware and Software requirements. I have a 32-bit version of Windows, can I run EaSeq? I have a monitor with a resolution that is lower than 1920×1080 pixels, can I run EaSeq? I use a Mac, can I run EaSeq? Yes You will need to install a virtual machine allowing you to run Windows (and its programs) from your Mac OS desktop. Parallels and WMWare Fusion are among the most widely used. Please let us know about y...Yes Y...

bcbio.wordpress.com

Distributed exome analysis pipeline with CloudBioLinux and CloudMan | Blue Collar Bioinformatics

https://bcbio.wordpress.com/2011/08/19/distributed-exome-analysis-pipeline-with-cloudbiolinux-and-cloudman

Distributed exome analysis pipeline with CloudBioLinux and CloudMan. Establishing community resources that meet the challenges of building these pipelines ensures that bioinformatics programmers can share the burden of building large scale systems. Two open-source efforts which aim at providing this type of architecture are:. 8212; A community effort to create shared images filled with bioinformatics software and libraries, using an automated build environment. And the Galaxy Team. Is used for communicat...

pvh.wp.sanbi.ac.za

Bioinformatics | low order magic

http://pvh.wp.sanbi.ac.za/category/bioinformatics

A blog about systems and bioinformatics geekery. MaterializeCSS vs ReactJS: the case of the select. June 21, 2016. For historical reasons, the COMBAT TB web interface uses materialize. For its styling. So far so good. That is, until I tried to deploy my code, written with React.JS. See, as I understand it,. Has in some cases decided to replace some HTML elements with its own version of them. Notably the. Relies on these elements for its own operation. The first problem I had was that. Event, I added the ...

researchtech.iu.edu

Research Technology Expo - Services for biomedical, biological, and health-related research

http://researchtech.iu.edu/biomedical.php

Services for biomedical, biological, and health-related research. There are special considerations in health-related research because of legal guidelines about privacy of electronic protected health information. Research Technologies delivers services for HIPAA compliant workflows for computing and storage, including survey tools, databases, data management tools, and data repositories, IndianaCTSIhub - the core collaboration tool for the Indiana Clinical and Translational Science Institute, and geno...

epicore.med.cornell.edu

Epigenomics Core @ WCMC

http://epicore.med.cornell.edu/resources.php

ERRBS (DNA Methylation Sequencing). WGBS (DNA Methylation Sequencing). Long Range and Single Cell Sequencing. What you need to do. Create an iLab Account/ID. Create an account in the web-based iLab LIMS. By following the instructions under GETTING STARTED. Set up payment information in iLab. Weill Cornell Medicine) require Fund Numbers. For work to begin. Please follow the instructions in the WCMC iLab Instructions PDF. To add fund numbers to your iLab account. If required, towards setting up payment.

smallchangebio.wordpress.com

Small Change Bioinformatics | Page 2

https://smallchangebio.wordpress.com/page/2

July 11, 2014. Notes: Bioinformatics Open Source Conference 2014 day 2: Philip Bourne, Software Interoperability, Open Science. I’m at the 2014 Bioinformatics Open Source Conference (BOSC). In Boston. It’s a great two day conference devoted to open source, science and community. These are my notes from the day 2 morning session. Next Day Video. Recorded all the talks and they’re available on the Open Bio video site. Biomedical Research as an Open Digital Enterprise. Mentions the current issue that softwa...

nstoler.com

Genome Graphic

https://nstoler.com/misc/yourgenome.html

Here I describe a tool I wrote to represent personal genomes in a single, visually appealing graphic. It can turn any sequence into a graphic, but the focus is on representing whole genomes and the minute differences between them that make them unique. You can read the explanation below, skip to the examples. Or to the tool itself. Now an installable Galaxy. Exponential trend. The best way to emphasize this is with a chart from the NHGRI's page at genome.gov/sequencingcosts. With 3 billion nucleotides, o...

cdwscience.blogspot.com

Genomics, ETC.: October 2013

http://cdwscience.blogspot.com/2013_10_01_archive.html

A blog about genetics, genomics, and medical research. Monday, October 21, 2013. Analyze Your 16S rRNA Data Using MG-RAST. Register for an Account. You can use this link to register: http:/ metagenomics.anl.gov/? Automated, so registration is not immediate. It took about a day. To create an account for me. Once you receive an e-mail saying "MG-RAST - account request approved", you can sign-in for the next step. Go to the MG-RAST website: http:/ metagenomics.anl.gov/. I would recommend using Firefox.