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DNA Subway | CyVerse

http://www.cyverse.org/dna-subway

BisQue Image Analysis Environment. DNA Subway makes high-level genome analysis broadly available to students and educators, and provides easy access to the types of data and informatics tools that drive modern biology. Using the intuitive metaphor of a subway map, DNA Subway organizes research-grade bioinformatics analysis tools into logical workflows and presents them in an appealing interface. By "riding" different lines users can:. Analyze RNA-Seq data for differential expression (Green Line).

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BisQue Image Analysis Environment | CyVerse

http://www.cyverse.org/bisque

BisQue Image Analysis Environment. BisQue Image Analysis Environment. BisQue (Bio-Image Semantic Query User Environment) allows you to store, visualize, organize and analyze images in the cloud. BisQue was developed for the exchange and exploration of biological images, but can support image data from other domains. BisQue is developed at the Center for Bio-Image Informatics. And be granted access to BisQue. Free and open source. Flexible textual and graphical annotations. Integrated image analysis, high...

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Science APIs | CyVerse

http://www.cyverse.org/science-apis

BisQue Image Analysis Environment. About the Science APIs. You can request clients for available APIs so that you can implement CyVerse's science APIs programmatically. Once approved to use the client (usually within two business days), you receive an email with an auto-generated key and secret code, which can be regenerated if necessary. To learn how to register an API client for your account and search for users with full REST API, see Using CyVerse API Clients. Developers and bioinformaticians can bui...

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Pheno2GRN: a workflow for phenotype to gene network study and reverse engineering comparison | CyVerse

http://www.cyverse.org/node/1618

Pheno2GRN: a workflow for phenotype to gene network study and reverse engineering comparison. Proceeding BCB '14 Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Thursday, October 30, 2014. Weinandt, Nick, Laura M. Jackson, Etienne Z. Gnimpieba, and Carol Lushbough. Http:/ dx.doi.org/10.1145/2649387.2660851. Doi: 10.1145/2649387.2660851.

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Data Store | CyVerse

http://www.cyverse.org/data-store

BisQue Image Analysis Environment. Whether your data is small or large kilobytes to terabytes, or structured or unstructured CyVerse's cloud-based Data Store can help you with your data storage needs. About the Data Store. Based on a technology called iRODS. Hosting your data in CyVerse's Data Store allows you to:. Use your preferred access method to upload, download, and access data from your computer to the Data Store. Share your data instantly with other users. If you are more comfortable with a.

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Code | CyVerse

http://www.cyverse.org/code

We offer a variety of solutions for your software and infrastructure development needs, whether you are looking to use our platforms to power your solutions in the lab or classroom, set up your own website using CyVerse’s extensible infrastructure, or build upon our open source code. This page offers an overview of ways to interact with our infrastructure for development opportunities. Using our Development Platforms. Use hundreds of bioinformatics apps and manage data in a simple web interface. Powered ...

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Powered by CyVerse | CyVerse

http://www.cyverse.org/powered-by-cyverse

BisQue Image Analysis Environment. About Powered by CyVerse. Third-party projects can leverage our cyberinfrastructure to provide services to their users, including:. Authentication system: Use secure single sign-on between your application and all CyVerse services. Data Store: Store, share and distribute large amounts of data. High-performance framework: Execute analyses on High Performance Computing resources. Becoming Powered by CyVerse. Using the Powered by CyVerse logo. Uses CyVerse's centralized au...

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Welcome to the Learning Center | CyVerse

http://www.cyverse.org/learning-center

BisQue Image Analysis Environment. Use the Wiki and JIRA. Welcome to the Learning Center. About the Learning Center. The Learning Center provides valuable information about the CyVerse tools and platforms to help you learn about CyVerse at your own pace. We make science easier by storing your data, running analyses faster, and publishing results, to name a few. Download our Why Guide. An account, including resetting your password, retrieving a forgotten username or email, changing your email, and more.

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Discovery Environment | CyVerse

http://www.cyverse.org/discovery-environment

BisQue Image Analysis Environment. The Discovery Environment (DE), a key product of the CyVerse cyberinfrastructure, provides a modern web interface for powerful computing, data, and analysis app resources for your scientific analyses. By providing a consistent user interface for access to the tools and computing resources needed for specialized scientific analyses, the Discovery Environment facilitates data exploration and scientific discovery. Access, manage, and share data files, workflows, analyses r...

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Connect | CyVerse

http://www.cyverse.org/connect

Education, Outreach, Training. Core education and training goals. Our education and training objectives revolve around achieving five core objectives that we believe will lower the barriers between CyVerse users and their educational and scientific objectives:. Give users a Big Picture understanding of the CyVerse computational infrastructure. Help users identify applicable components of our infrastructure to solve their problems. Illustrate how computational thinking can guide investigation design.