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University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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UWEncode - Home | uwencode.org Reviews

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University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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2 uw encode

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6 publications

7 software

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UWEncode - Home | uwencode.org Reviews

https://uwencode.org

University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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genome.uwencode.org

UCSC Genome Browser Home

About the UCSC Genome Bioinformatics Site. Welcome to the UCSC Genome Browser website. This site contains the reference sequence and working draft assemblies for a large collection of genomes. It also provides portals to ENCODE. Data at UCSC (2003 to 2012) and to the Neandertal. Project. Download or purchase the Genome Browser source code, or the Genome Browser in a Box ( GBiB. At our online store. We encourage you to explore these sequences with our tools. The Genome Browser. The Genome Browser project ...

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uwencode.org

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UWEncode - Software: Bedops

http://www.uwencode.org/software

The utilities in the BEDOPS software suite help to address common questions raised during genomics studies, mostly with regard to overlap and proximity relationships between data sets. A prominent advantage of the utilities over related software is scalability: the tools are designed to work with arbitrarily large data in a relaxed BED format. You can download code and binaries at the bedops GitHub site. You can also discuss the BEDOPS suite at our users forum. The utilities in the suite are:. The conver...

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UWEncode - Sitemap

http://www.uwencode.org/sitemap

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UWEncode - Data Quality: Quality Control Pipeline (post library sequencing)

http://www.uwencode.org/data/quality

Data Quality: Quality Control Pipeline (post library sequencing).

4

UWEncode - Publications

http://www.uwencode.org/publications

J Bioinform Comput Biol. Proc Natl Acad Sci USA. An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level. Developmental fate and cellular maturity encoded in human regulatory DNA landscapes. DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements. Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions. Proc Natl Acad Sci USA. Widespread plasticit...

5

UWEncode - About: Goals

http://www.uwencode.org/about

The overall aim of the UW ENCODE Project is to create comprehensive, high-quality catalogues of human and mouse DNasel hypersensitive sites (DHSs) spanning all major tissue lineages and key developmental time points. A key focus of our production effort is on data quality, a strategy that served the Human Genome Project well. Accordingly, samples are rigorously screened in a pipeline fashion, with only a select set advancing to whole-genome data collection. Collectively, we aim to establish a high-qualit...

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stamlab.org

StamLab

http://www.stamlab.org/program/encode_project

Altius Institute for Biomedical Sciences. Depts of Genome Science and Medicine. Gene Regulation and Common Disease. Functional footprinting of regulatory DNA. Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo. Cell-of-origin chromatin organization shapes the mutational landscape of cancer. A comparative encyclopedia of DNA elements in the mouse genome. Conservation of trans-acting circuitry during mammalian regulatory evolution. 9650; Back to Main.

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uwencode.org

UWEncode - Home

University of Washington Human and Mouse ENCODE Center. The UW ENCODE Project aims to create high-quality, genome-wide catalogues of human and mouse DNaseI hypersensitive sites (DHSs) for all major cell and tissue types. DHSs mark diverse cis-regulatory elements including enhancers, promoters, silencers, insulators, and locus control regions. May 20, 2013 mm9 DNase-seq Liver. May 16, 2013 mm9 DNase-seq CH12. April 27, 2013 hg19 Exon Array H7-hESC. April 27, 2013 hg19 Exon Array H7-hESC. Seattle, WA 98121.

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