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VCFtools

A set of tools written in Perl and C for working with VCF files. Is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files. This toolset can be used to perform the following operations on VCF files:. Filter out specific variants. Convert to different file types. Validate and merge files. And a binary executable.

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VCFtools | vcftools.github.io Reviews

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A set of tools written in Perl and C for working with VCF files. Is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files. This toolset can be used to perform the following operations on VCF files:. Filter out specific variants. Convert to different file types. Validate and merge files. And a binary executable.

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VCFtools | vcftools.github.io Reviews

https://vcftools.github.io

A set of tools written in Perl and C for working with VCF files. Is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files. This toolset can be used to perform the following operations on VCF files:. Filter out specific variants. Convert to different file types. Validate and merge files. And a binary executable.

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vcftools.github.io

1

VCFtools

http://vcftools.github.io/examples.html

A set of tools written in Perl and C for working with VCF files. Getting Started with VCFtools. To download VCFtools, please see the downloads. Page Once downloaded, open a terminal and change the working directory to the file download location. If the program was downloaded as a tarball, it must be uncompressed using the following command (replacing it with current version number):. Tar -xvf vcfools.0.X.XX.tar.gz. The program must now be compiled. Change to the specified target directory. Old manuals: v...

2

VCFtools

http://vcftools.github.io/downloads.html

A set of tools written in Perl and C for working with VCF files. Can be downloaded in tar or zip format from the project's github repository via the links on the left or on the page here:. Can be downloaded through the git client. If git is installed, run the following command:. Git clone https:/ github.com/vcftools/vcftools.git. The above command is required to be run only once, for any subsequent updates run the following command from your local vcftools directory:. Hosted on GitHub Pages.

3

VCFtools

http://vcftools.github.io/license.html

A set of tools written in Perl and C for working with VCF files. The program package is released under the GNU Lesser General Public License version 3.0 (LGPLv3). If you make use of VCFtools in your research, we would appreciate a citation of the following paper:. The Variant Call Format and VCFtools. The program package is maintained and developed by:. Petr Danecek (Perl Module, HTSlib). Anthony Marcketta (C Module). VCFtools poster from May 2013. Hosted on GitHub Pages.

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VCFtools

http://vcftools.github.io/links.html

A set of tools written in Perl and C for working with VCF files. 1000 Genomes Project main page. The Genome Analysis Toolkit. The GATK Java package from the Broad includes a number of routines for generating and manipulating VCF file. A toolset that can generate VCF files from SAM or BAM format files. An indexing tool that is required for certain features in the PERL API. A simple C library for parsing and manipulating VCF files from Erik Garrison. Some Python utilities to work with VCF from Amit Indap.

5

VCFtools

http://vcftools.github.io/index.html

A set of tools written in Perl and C for working with VCF files. Is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files. This toolset can be used to perform the following operations on VCF files:. Filter out specific variants. Convert to different file types. Validate and merge files. And a binary executable.

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About Archer | ArcherDX

http://analysis.archerdx.com/about_archer

Version 5.0.5. This product was developed, manufactured, and sold for in vitro use only. The product is not suitable for administration to humans or animals. MSDS sheets relevant to this product are available upon request. End User License Agreement. Copies of these licenses are included with the source code for these packages included in this distribution. All applications are provided to you WITHOUT WARRANTY OF ANY KIND. MIT / GNU General Public License. GNU General Public License. Boulder, CO 80301.

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vcftools.github.io

VCFtools

A set of tools written in Perl and C for working with VCF files. Is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files. This toolset can be used to perform the following operations on VCF files:. Filter out specific variants. Convert to different file types. Validate and merge files. And a binary executable.

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